LOCUS AK102445 2047 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033093N21, full insert
sequence.
ACCESSION AK102445
VERSION AK102445.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2047)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2047
/clone="J033093N21"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 544..1722
/db_xref="Osa1:LOC_Os09g25620"
/db_xref="RAP-DB:Os09g0424300"
/note="(RAP Annotation release2) S-adenosylmethionine
decarboxylase"
/note="(Rice Genome Annotation Project)
S-adenosylmethionine decarboxylase proenzyme, putative,
expressed"
/note="mapping to R09-TIGRv4S1-000409R (Chr.9: short
arm=15384694, long arm=15388094, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG95558.1"
/translation="MSMSLADSWGSAPASPIGFEGYEKRLEITLSDAPVFVDPCGRGL
RALSREQIDSFLDLAKCTIVSHLSNKHFDSYVLSESSLFVYPHKVVLKTCGTTKLLLS
IPRILELAAELSLPVLSVKYSRGMFIFPGAQPSPHRSFLEEVSVLNSFFGGLKSGGNA
YVIGDAFKPKKKWHVYYATEEPEQPMVTLEMCMTGLDAKKAEVFFKDSTDGSCSSAKE
MTMFSGISEIIPEMEICDFEFDPCGYSMNGIYGPAVSTIHVTPEEGFSYASYEAMNFN
PSSLVYDDLIKKVLACFCPSDFSVAVTIFGGHGFAKSWAKGAEVDSYMCDDLVEQELP
GGGVLMYQSFTAVTPGAVSPRSTLDGWNSDGAEMVAKSKEMSVCWEGEKAAKKKDADA
"
BASE COUNT 434 a 500 c 493 g 620 t
ORIGIN
1 gacgcctcgg caatccaaag ccctcctcgt cctcgcagag catccattgc ctcgattttc
61 tattccaaat tcccccacgc gaagaacagc cagcgccctc ctcctcctcc tccttcgcct
121 tcctcctggt ttcttgccat ctttccaggg aaggaggaac cgcggcccgg ccgcattctt
181 ggacaagaat tgttggcata aaggaacatt ttgttgatgt tctaatggag tcaaaaggtg
241 gcaaaaagaa gtctagcagt agtagttcca tgtacgaagc tcccctaggc tacaagattg
301 aggacgttcg cccagccgga ggaatcaaga agttccagtc tgctgcttac tccaactgcg
361 ctcgcaagcc atcctgatat tccttcacat gcctttcccc gtagagtagg aatttcctgc
421 aatttttcct ttgttttgtt gcaataaatc tcccttggct ggctgctttc tcaatctctt
481 cccttgtctt ctccgatctc ttctttcctg tcttgtccac tgctccttgc aacacttgat
541 caaatgtcga tgtccttggc tgattcttgg ggctctgccc ctgcctcgcc cattgggttt
601 gaaggctatg agaagcgcct tgagataaca ttgtctgatg cgcccgtctt tgtggacccc
661 tgtggtcgcg gccttcgtgc cctctcacgt gagcagatcg actcgttctt ggatcttgca
721 aagtgtacca ttgtatccca tctttcgaac aagcacttcg actcatatgt gctttcagag
781 tcgagccttt ttgtttatcc ccacaaggtt gttctgaaga cctgtggtac aacaaagctt
841 ctgctctcca ttcctcgcat ccttgagctt gctgcagagt tgtcactgcc tgttctatca
901 gtgaagtact ctcgtgggat gttcatcttc cctggagcgc agccatcacc gcatcgcagc
961 ttcttggagg aggtttctgt gctcaacagc ttctttggtg gcctcaagtc aggtggcaat
1021 gcttatgtca ttggtgatgc attcaagccc aagaagaagt ggcatgtcta ctatgccaca
1081 gaagagcctg agcagcccat ggttacactc gagatgtgca tgactgggct ggatgctaag
1141 aaagctgagg tgttcttcaa ggattccact gatggctcct gctcatcagc taaggagatg
1201 actatgttct ctgggatttc tgaaatcatc cctgagatgg agatttgtga ctttgagttt
1261 gacccgtgtg ggtactcaat gaatggcatt tatggtcccg ccgtctccac gatccatgtc
1321 actcctgagg aaggtttcag ctatgcaagc tatgaagcaa tgaacttcaa tcctagctcc
1381 ttggtctacg atgatttgat caagaaggtc ctggcttgtt tctgcccttc agacttttcg
1441 gtcgctgtta ccatcttcgg tgggcatggt tttgccaaat catgggcaaa aggtgcagag
1501 gttgattcct acatgtgcga tgatcttgtt gagcaagagc ttcctggtgg cggtgtgctg
1561 atgtatcaga gttttactgc tgttactcct ggtgctgtgt caccgaggtc gaccttggat
1621 ggctggaaca gcgatggagc agagatggtt gcgaagagca aagagatgag tgtctgctgg
1681 gaaggagaga aggcggcgaa gaagaaagat gcagatgcct gagaaatcgg cagttcttca
1741 acctcaagtt gcaagtttga ttcatctgaa gtttctgaga cgccttattt ggttctgctc
1801 ttgcggtttc ggttaagcag ctggctgggc taccggcaaa gcatatgtta cttgttcatt
1861 gttcttttat atctgtctgc ccaaataagt gctctagatg gtttgctgcg tctgccatag
1921 tgagcaattc agattgtagt agaattctta tctgttgccg atgctcttta agggagaatg
1981 atatgtaact cgattatttt caataactat tgcaacttcc ataattttct gtccattggt
2041 tatgttt
//