LOCUS AK102422 2089 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033093E03, full insert
sequence.
ACCESSION AK102422
VERSION AK102422.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2089)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2089
/clone="J033093E03"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2089
/db_xref="Osa1:LOC_Os05g44330"
/note="(Rice Genome Annotation Project)
4-methyl-5-thiazole monophosphate biosynthesis protein,
putative, expressed"
/note="mapping to R05-TIGRv4S1-000937F (Chr.5: short
arm=25714408, long arm=25719976, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 508 a 502 c 515 g 564 t
ORIGIN
1 gttccaggct cgagcactcc gttctcccgg gtctccggtg ctgctcccgc cgcagccgga
61 cacccgaacg cgaagctcca actctccaat gctcccctcg tctcgttacc tcctcgcccc
121 ggccccactt cccgccatgg tggtacggcc accgccgccg catccaccga gccgcggaac
181 ttcccctctc gctcggccac cattgtgccg cgccatggcg cgggccgccc cctcgctctc
241 tgccgcggcc tcgacggctg cctcctcctc gacgactcct gccaagaaga aggttctctt
301 gcccatcgcc atgggcacgg aggagatgga ggcagtcatc cttgccggtg tactccgccg
361 agccggcgcc gacgtgacgc tggcatccgt ggaggacggc ctcgaggtgg aggcctcgcg
421 tggctcccac atcgttgctg acaagcgcat tgccgcttgt gcagaccagg tgttcgacct
481 cgtggctctc ccgggtggaa tgcctggttc agtgcggttg agagacagtg tgatccttca
541 gaggatcaca gttagacagg ctgaggaaaa aagattgtat ggtgctatat gtgctgcacc
601 agctgttgtt ctcatgccgt ggggcctcca caagagaaaa aagatcactt gtcacccatc
661 ctttatagaa gatctcccaa cattccgaac tgttgaatca aatgttcagg tgtctggaga
721 gctaacaaca agccgtggac cagggacagc atttcagttt gctttatcat ttgtagagca
781 gttgtttggg ccttgtaaag ctgaagatat ggacaacact ttgttgacaa aggttgacga
841 taatcttgaa agaagtattg aagtcaacga aattgagtgg tcttctgatc acaatcctca
901 tgttctcatt ccaattgcaa atggttcagg agagatggag ataataatgt tgacggatgt
961 tttacggcga gcaaatgtaa atgtggtgtt ggcatcagtt gaaaaatcaa caagtattgt
1021 cgggtcccaa aggatgagga ttgttgctga taaatgcatt tcagatgctt ctgccttaga
1081 atatgatcta attatccttc ctggaggacc tgccggagct gagagactgc acaagtccag
1141 tgttcttaag aaattactca aggaacaaaa gcaaacaggc aggatgtatg gtgggatctg
1201 ttcttctcct gtgatcttgc agaagcaggg tttactccag gataaaacag tgacagctca
1261 tccttccata gtcaatcagc tcacgtgtga agttattgat cgatcaaagg ttgtgattga
1321 tggaaatttg attaccggga tggggcttgg gacggtcatt gatttttcgc tggctattat
1381 taaaaaattc tttggccatg gacgagccaa aggcgtggca aatggcatgg tttttgagta
1441 tcccaagagc tgaaacacct aaaatatatc tggcactctg taatacgcag acgtgggaca
1501 tttagttgtg ctgcaagtat attgcagtag ctacgcttga gacaaaggtc accggtgctc
1561 ttcgtcttgc tgttttatgg gccttcaact cttcttgaga caacaacata ttcctctgtt
1621 gcgtcattgg acatctggac ggaaatcatt ccactatatt tgttgggatg gaccatttac
1681 attgagaaga ttcggtggag gtcaattcat ctcgatatga tctgttggca cattacgaca
1741 caggttgatt actaactgga tctaaatatt gcaactgatc aagtgatgat aaccttctgc
1801 ttgacggatg cgcttttaga agaaacccat catgttcagt ggggcttcca aggacctgaa
1861 gcccttttga tgttgctctt atgcccagct atccaatctg atagtagaga cttccagcct
1921 gcgacaaacc aatttagctt cgaaattcag atcttttttc agcaattttg ttgcctgaat
1981 tctgaagtta actggcaatg tagtacaatg gattccctca atttgctcga tagttgatca
2041 gataatttgc tcgatagttg atcaaatatt tgttgcaaca aacatgctc
//