LOCUS AK102379 3270 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033092A08, full insert
sequence.
ACCESSION AK102379
VERSION AK102379.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3270)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3270
/clone="J033092A08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 393..2834
/db_xref="Osa1:LOC_Os11g38900"
/db_xref="RAP-DB:Os11g0602200"
/note="(RAP Annotation release2) Similar to SET domain
protein SDG111"
/note="(Rice Genome Annotation Project) histone-lysine
N-methyltransferase, H3 lysine-9 specific SUVH1,
putative, expressed"
/note="mapping to R11-TIGRv4S1-000692F (Chr.11: short
arm=22657148, long arm=22662886, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG95527.1"
/translation="MAGTRQTTSVPMDNAAVVDAKPLRTLTPMFPAALGLHTFTAKEN
SSSIVCITPFGPYAGGTEQAMPASIPPMFASPAAPADPNQRQPYAVHLNGAAPANGTA
NNTGVIPDLQIAVAGTVESAKRKRGRPKRVQDSSVPSAHLVPSAPGGNITAVQTPPSA
TTDESGKKKRGRPKRVQDVPVLSTPSAPQVDSTVFQTPASAVNESVTRKRGRPRRVQD
GADTSAPPIQSKYNEPVLQTPSAVTLPEDGKRKRGRPKRVPDGALIPLSHSGVSIDDD
SGEIITGKRGRPRKIDVNLLNLPSLFSDDPRESVDNVLMMFDALRRRLMQLDEVKQGA
KQQHNLKAGSIMMSAELRANKNKRIGEVPGVEVGDMFYFRIEMCLVGLNSQSMSGIDY
MSAKFGNEEDPVAISIVSAGVYENTEDDPDVLVYTGQGMSGKDDQKLERGNLALERSL
HRGNQIRVVRSVRDLTCPTGKIYIYDGLYKIREAWVEKGKTGFNVFKHKLLREPGQPD
GIAVWKKTEKWRENPSSRDHVILRDISYGAESKPVCLVNEVDDEKGPSHFNYTTKLNY
RNSLSSMRKMQGCNCASVCLPGDNNCSCTHRNAGDLPYSASGILVSRMPMLYECNDSC
TCSHNCRNRVVQKGSQIHFEVFKTGDRGWGLRSWDPIRAGTFICEYAGEVIDRNSIIG
EDDYIFETPSSEQNLRWNYAPELLGEPSLSDSSETPKQLPIIISAKRTGNIARFMNHS
CSPNVFWQPVLYDHGDEGYPHIAFFAIKHIPPMTELTYDYGQSQGNVQLGINSGCRKS
KNCLCWSRKCRGSFG"
BASE COUNT 901 a 684 c 819 g 866 t
ORIGIN
1 gtgcctctct tctcaccgtg ccaaaaccct agagctctcc tccctcctct gtactcacct
61 tccggcggcg caccaggcgg gctcgagggc ggagtgggag acgggcggcg actccgggcg
121 gccgcgggcg gcggcgaggg cggggactct cctggcggcc cagtcggcaa ggacgtaggg
181 ggcagcgagc agaccaattt tttctccttc cactcctctt caaatcaagt tggttagctc
241 aagatctgtg atgaacgacc aagcttcctt ttagatcttc tgtttattct ccttgcttaa
301 cctaaactat gactggtaaa caaacctaga gaagatacaa aggaaataac ggcataaact
361 tttgttttgc aaaagattaa cagtggctta ccatggctgg aactcggcag acaacttcag
421 ttccgatgga taatgcagca gttgttgatg caaaaccctt gcgcacattg actcccatgt
481 tccctgcggc acttggtctg cacactttca ctgctaaaga aaactcatct tcgattgtct
541 gtattacccc gtttggacca tatgctgggg gcactgaaca ggcaatgcct gctagtattc
601 caccaatgtt tgcatcaccg gctgcccctg cagaccccaa ccagaggcag ccatatgctg
661 ttcacttgaa tggagctgct cctgctaacg gtacagcaaa caacacaggg gtcatccctg
721 atttgcaaat agctgtggca ggtacagtgg aatctgctaa gaggaagagg ggcagaccca
781 agcgcgtgca agattcttct gttccttcag ctcatttggt tccttcagct ccaggaggta
841 acatcactgc tgtccagacg cctccttcag caaccacaga tgaatctggt aagaagaaga
901 ggggacggcc caagcgggta caagatgtac ctgtcctgtc aactccttca gctcctcagg
961 tagatagtac agtttttcag acacctgctt ctgctgtaaa tgaatctgtt acgaggaaaa
1021 ggggacgacc caggcgtgta caggatggtg cagatacttc agctcctcca attcaatcaa
1081 aatataatga gcctgttttg cagacacctt ctgctgtcac cttaccagaa gatggtaaga
1141 ggaagagagg gcggccaaag cgtgtgcctg atggtgcact gattccttta agtcactcag
1201 gtgtttcgat agatgatgac agtggtgaaa taataacagg gaaacgtgga cggcctagga
1261 aaattgatgt caatcttctg aatctgccat ctttgttttc agatgatcct agggaatctg
1321 ttgataatgt actcatgatg tttgatgcac tgcggcggag gctcatgcag ttggatgagg
1381 tgaagcaagg agcaaagcag caacataact taaaggccgg gagtatcatg atgagtgctg
1441 aacttcgtgc aaataagaac aagaggattg gagaggttcc aggtgtcgag gttggtgata
1501 tgttctactt cagaatagag atgtgtctgg ttggactgaa tagtcagagc atgtctggga
1561 ttgattacat gtctgctaag tttggtaatg aggaggatcc tgtggctatc agtatcgtgt
1621 cagctggtgt gtatgagaat accgaagatg acccagatgt gctggtttac actggacagg
1681 gcatgtctgg aaaggatgac caaaagcttg aaagaggtaa tcttgcactt gaaaggagtt
1741 tgcatagagg taatcaaatc agagttgttc gtagtgtaag agatttgact tgtcctactg
1801 gtaagatata catttatgat ggcctttata aaataagaga agcatgggtg gagaaaggaa
1861 aaactggctt taatgtgttt aaacacaagc tgctcagaga acctggtcaa cctgatggca
1921 tagcagtgtg gaagaagact gaaaaatgga gggagaatcc ttcctctcga gaccatgtta
1981 tattgcgtga catatcatat ggtgcagaaa gcaagcctgt ttgccttgtg aatgaagtgg
2041 atgatgagaa aggtcctagc cacttcaact acacaactaa actgaactac aggaattctc
2101 tcagctcaat gagaaagatg caaggctgca attgcgcaag tgtgtgcctt cctggtgata
2161 acaactgctc ttgcactcat cgaaatgccg gtgatcttcc atacagtgct tcaggcatac
2221 ttgttagccg gatgcctatg ctgtatgagt gtaacgattc ctgtacatgc tcacataatt
2281 gccggaaccg agttgtacag aaaggttctc agatccactt tgaggtgttt aagacaggag
2341 atcgaggttg gggacttcgt agttgggatc caattcgggc aggcacattt atttgtgaat
2401 atgcaggaga agttattgac agaaacagta tcattggaga agatgattac atctttgaga
2461 caccgtcttc tgagcagaat ttaagatgga actatgcacc agaattactg ggtgaaccca
2521 gtctttctga ctcaagtgag acacctaagc aactgccaat aattatcagt gcaaaacgaa
2581 ctggaaacat agctcgcttt atgaaccaca gctgctcacc aaatgttttt tggcaaccag
2641 ttttgtatga tcatggtgac gagggatatc cacatatcgc attctttgca atcaagcata
2701 ttcctccgat gacagagctt acatatgatt atggtcagag ccagggtaat gttcaactgg
2761 gaatcaattc tggatgtcgg aagtccaaaa actgcttatg ttggtctcgc aagtgcagag
2821 gttcctttgg ctaaaatgcg aaccctgcaa caaaaacatt aaagcataat ctgccattgc
2881 aagaagtagg cgattgttgt agaactatga agcagcaggg tgcattcagt gtttcaagat
2941 gccatgtaat aaggttggcc ttcgtctgga tgagaatgca aaagagggta tttattgcag
3001 aaagcattgg cattgtacca aactttattg gaataactag tatttagcgt agcatctgaa
3061 ttccgagaag gttggaaccg tgttactatg ttcttgtagt gtagttgttt ctcctgttta
3121 agagaacttt accaactgta gaatgccatg catatggttg catcgcaaga ttttcctggg
3181 cttcgcatgc cagtcgtgca ctcgccgtat gtttttctgt aatattaatg gctacataat
3241 gcatcctgta ataatcatgg tagtagctcc
//