LOCUS AK102367 2686 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033091K10, full insert
sequence.
ACCESSION AK102367
VERSION AK102367.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2686)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2686
/clone="J033091K10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 494..2659
/db_xref="Osa1:LOC_Os12g32820"
/db_xref="RAP-DB:Os12g0512700"
/note="(RAP Annotation release2) Similar to PDR9 ABC
transporter"
/note="(Rice Genome Annotation Project) PDR-like ABC
transporter, putative, expressed"
/note="mapping to R12-TIGRv4S1-000571R (Chr.12: short
arm=19804196, long arm=19808528, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG95519.1"
/translation="MTVRETLDFSSRCQGVGRRPKILKEVSARESAAGIIPDADIDIY
MKAISVEASKRSLQTDYILKIMGLEICADTMVGDAMIRGLSGGQKKRLTTAEMIVGPA
RAYFMDEISNGLDSSTTFQIISCFQQLTNISEYTMVISLLQPTPEVFDLFDDLILMAE
GKIIYHGPRNEALNFFEECGFICPERKEVADFLQEILSCKDQQQYWSGPNESYRYISP
HELSSMFKENHRGRKLEEPIVSPKSELGKEALAFNKYSLQKLEMFKACGAREALLMKR
SMFVYVFKTGQLAIIALVTMSVFLRTRMTTDFTHATYYMGALFFSILMIMLNGTPEIS
MQIRRLPSFYKQKSYYFYSSWAYAIPASVLKVPVSILDSLVWICITYYGIGYTASVSR
FFCQFLMLCFVHQSVTSLYRFIASYFQTPTASFFYLFLALTFFLMFGGFTLPKPSMPG
WLNWGFWISPMTYAEIGTVINEFQAPRWQKETIQNITIGNRILINHGLYYSWHFYWIS
IGALFGSIILFYIAFGLALDYITSIEEYHGSRPIKRLCQEQEKDSNIRKESDGHSNIS
RAKMTIPVMELPITFHNLNYYIDTPPEMLKQGYPTKRLQLLNNITGALRPGVLSALMG
VSGAGKTTLLDVLAGRKTGGYIEGDIRIGGYPKVQETFVRILGYCEQADIHSPQLTVE
ESVTYSAWLRLPSHVDKKTRSVCPLEVGTTQTYTDFNNR"
BASE COUNT 782 a 605 c 578 g 721 t
ORIGIN
1 ggccgccgca attcgctcgc cgccgccgcc gccgccggtg ggcggtggct tgccacctcc
61 ctctccgcct ccggcagcct tctacgctgc ccgtctccgt ctcttctccc ttcacccaaa
121 tccccagaca ttcggccatg gccccccctg actcttctct cttcttggcc gcccgccgcg
181 gcgctgcctg acgaggatcg gcggctcggg gcggaggaac cccgagcttc cggcgcgagg
241 gggtggcctc ctcctcctcc tcatcctcat cgtcgccgcc gcccacgtcg tctcgccctc
301 ggccaacgcc cgagctcgac cacaaactaa aaatcaagaa caagaaagtt ttatgttctg
361 acaaactgaa tgtgaagatg caaagctttt acaggtaaca ggggatatct cttacaatgg
421 ctatcagctt gatgaatttg tgcctgagaa aacagccgcg tatatcagcc aatacgattt
481 acacattcct gagatgactg tgagggagac tttggacttc tcatcccggt gccaaggtgt
541 tggaagaaga ccaaaaatac tcaaggaggt gagcgcgagg gagagcgcgg cggggatcat
601 acctgatgcg gacatagata tatacatgaa ggctatatca gttgaagctt caaagagaag
661 cctacagaca gactatattt tgaagatcat ggggctagag atatgcgcag acacgatggt
721 tggggatgca atgataagag gactatcagg ggggcagaag aaaagattaa ccacagctga
781 gatgattgtg gggcctgcaa gagcatactt tatggatgaa atatcaaatg gtctggatag
841 ctctaccact tttcaaataa taagttgttt ccagcaactg acgaacatca gcgagtacac
901 catggttatt tcacttcttc aaccaacacc tgaggtattt gatctttttg atgacctgat
961 attaatggca gaagggaaaa ttatatacca tggccctcga aatgaagctc tgaatttttt
1021 tgaggagtgt gggttcatat gcccagaaag aaaagaggta gctgactttc tccaagagat
1081 cttgtcctgc aaggaccaac aacagtactg gtctggtcca aatgaatctt acagatatat
1141 atcaccccat gaattatcaa gcatgttcaa ggaaaatcac agagggagaa aactagaaga
1201 accaattgtt tctccgaaaa gcgagttggg caaggaagct ttagcattca ataaatattc
1261 tctgcaaaaa ctggaaatgt tcaaagcctg tggagcaagg gaagcactcc taatgaaaag
1321 gagtatgttt gtttatgtct tcaaaacagg ccagcttgcc attattgcac tcgtaacaat
1381 gtctgtgttc cttcgaactc gcatgacaac agatttcact cacgcaactt actatatggg
1441 agcattgttt ttttccatct taatgatcat gctaaatggc acaccagaga taagcatgca
1501 gattaggaga ctcccaagtt tttacaagca aaagagctat tatttctatt cttcatgggc
1561 atatgcaata ccagcttcag tcctaaaggt ccctgtttcc atattagatt cacttgtatg
1621 gatatgtatc acatattacg gtattggtta tacagctagt gtttcgaggt tcttctgcca
1681 atttctgatg ctttgttttg tccatcaatc agtcacttcg ctgtatcgat ttattgcttc
1741 atacttccaa acacctactg cgtctttctt ctaccttttt ctggctctaa cattcttcct
1801 catgtttgga ggcttcactc ttcccaagcc ctccatgcca ggatggttaa actggggatt
1861 ttggatttct ccaatgacat atgcagaaat cggcacagtt attaatgaat tccaagcgcc
1921 aagatggcag aaggaaacta ttcaaaacat aacaattggg aaccgaatcc tgattaatca
1981 tggcctatat tacagttggc acttttattg gatatccatt ggagcattgt tcggatcaat
2041 cattttattt tatatcgctt ttggattggc gctagattat attacatcta tagaagaata
2101 tcatggaagt aggcctataa agaggttatg tcaagaacag gaaaaagatt ctaatatacg
2161 aaaagaatct gatggtcatt caaatatttc cagagcaaag atgactatac ctgttatgga
2221 acttccaatt acgttccaca atctgaacta ctacattgat accccaccgg aaatgctgaa
2281 acaaggctat ccaacaaaaa gacttcaact acttaacaac ataactggtg cattgcgtcc
2341 cggtgttctt tctgcactaa tgggtgtcag tggagccggg aagacaactc tgctagatgt
2401 attagcagga aggaaaacag gaggatatat tgaaggggac ataagaatag gtggatatcc
2461 caaggtgcaa gaaacatttg ttagaatctt aggttactgt gagcaagccg acatacattc
2521 cccacagctc acagttgaag agtctgtaac ttattctgct tggcttcgtc taccttctca
2581 tgtcgacaaa aaaacaagat ctgtatgtcc cttggaagtt ggaacaacac agacatatac
2641 tgattttaat aacagataga taaacaagaa gcttacctaa gaaact
//