LOCUS AK102337 2375 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033091A16, full insert
sequence.
ACCESSION AK102337
VERSION AK102337.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2375)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2375
/clone="J033091A16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2375
/db_xref="Osa1:LOC_Os03g10400"
/db_xref="RAP-DB:Os03g0201100"
/note="(RAP Annotation release2) Similar to
Cyclophilin-like protein PPIL3b"
/note="(Rice Genome Annotation Project) peptidylprolyl
isomerase like, putative, expressed"
/note="mapping to R03-TIGRv4S1-000323R (Chr.3: short
arm=5276450, long arm=5280463, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 718 a 465 c 581 g 611 t
ORIGIN
1 gaaacgctcc tcgccgtcaa atctcccctc tttctcgccg ccggcgagca gcagaagcag
61 cggcaccagc accaccggct gtaggcgcga tcttgtaggc tcatcggaga tggggaagaa
121 gcagcatagc aaggaccgga tgttcataac gcggacggag tgggcgacgg agtggggcgg
181 cgccaagcag aaggaggccg gcacgccctt caagcgcctt cccttctact gctgcgcgct
241 tacgttttta ccatttgagg atccagtgtg cacagcagat ggaagcgtct ttgatttgat
301 gagcataatt ccatacatta agaagttcgg gaagcaccca gtaacaggaa caccactcaa
361 gcaggaagat ctaatgcctt taacattcca caagaactca gatggagagt tccagtgccc
421 tgttttgaat aaagttttta cagaattcac gcatatagtt gctgtaaaga ctactgggaa
481 cgtcttctgt tatgaggtgg ggtttggcaa tccaagaact caacatcaag ccaaagaatt
541 ggagagaatt gctaactgat gagcccttta cacgaaatga cttgataaca attcagaatc
601 caaatgcggt tgatagcaag atcctaggtg aatttgacca tgtcaagaaa ggcctcaaac
661 ttgaagatga agagttgcaa cgaatgaaaa atgatccaac ctacaacata aatatttctg
721 gtgatcttaa gcaaatgatt aaggaacttg gaactgaaaa gggaaagtta gcttttttgc
781 atggtggggg agggcagaaa gctcaaaagg aaagagctgc tgcacttgct gctatattgg
841 caaaaaagga gaaggatgac tcaaaatctg gcaaagaacc taaacctcat cagcctttca
901 gtattgtaga tgctgcttct gcttctgttc atggcagaag tgcagccgca gcaaaggctg
961 ctactgctga gaaaacagct gctagaatag caatgcacat ggcaggagat cgagctcctg
1021 taaatgctaa actggttaaa agcagttaca ccacaggagc agcttcacgt tctttcacat
1081 caactgccta tgatcctgtc accaaaaatg aacttgagta tgttaaggtt gaaaagaatc
1141 caaaaaagaa gggatatgtt cagttgcata ccacccatgg tgatttgaat ttggagcttc
1201 attgtgatat aacacctcgg acatgtgaaa atttcctcac acattgtgaa aatggttact
1261 ataatggtct tatcttccat cgtagtatca aaaatttcat gattcaagga ggtgatccaa
1321 ctggcacagg aagtggaggg gagtccatat ggggtaaacc tttcaaggat gaactgaatt
1381 caaaacttat acattcagga agaggtgttg tcagcatggc taattctggg cctcatacca
1441 atgggtccca atttttcatc ttgtacaagt ccgcaccaca tttaaatttc aagcatacgg
1501 tatttggcat ggtggtcggt ggcttgacca ctctttcggc tatggaaaag gttcctgttg
1561 atgatgacga tcgaccattg gaggaaataa agatattaaa agtaagtgta tttgtgaacc
1621 cttacacgga accagatgaa gaagaagaag aaaaggcaaa ggaagaggag aagaaaaagg
1681 atgaggatta tgataaggtg ggatcatggt atagcaatcc aggcactggc gttgctggtt
1741 caactagctc tggtggtggc gttggcaagt acctaaaagc tcggacagct ggctttgctg
1801 atgtggttgc agatgattca aacaagaaaa gaaaagcgag tgtgtctaat gtagaattta
1861 aggatttctc tgggtggtag attcctgatg aacctcccct tctctcagaa gaaatggcta
1921 gtggaaactt cggtagcagc actgtggcat ttcttcaatc ttctgctatg gatttaaact
1981 aagatgctca aggtccacaa ttaagattct ctgtaagcag atccgagttg agtaacatga
2041 tccactctgg gtgggtgttt tgcggcaaaa gagttgcaca ctgagctata agagggatgc
2101 ttgggactta ggaaatttga ctggttcaat aactggaaat tcatgcttcc atcagtctgt
2161 gtctgaatta ttacaaataa aacttgagag ggccgagccg ccgaggggat cttaactttc
2221 cctcgttgat tcgaaaagcc ttttactgcc acaatccggg actgctgata ttgttatggc
2281 aagagttatg ctcaatctgg aactgttgat attgttggtt cattgcatgt ttataccgat
2341 aaatttgtat gccaataatc actgaaatca acttg
//