LOCUS AK102295 2106 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J033089L08, full insert sequence. ACCESSION AK102295 VERSION AK102295.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2106) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2106 /clone="J033089L08" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 126..1769 /db_xref="Osa1:LOC_Os10g05690" /db_xref="RAP-DB:Os10g0147400" /note="(RAP Annotation release2) Similar to Auxin influx carrier protein" /note="(Rice Genome Annotation Project) auxin transporter-like protein 3, putative, expressed" /note="mapping to R10-TIGRv4S1-000093R (Chr.10: short arm=2833767, long arm=2839957, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG95486.1" /translation="MASGSSGGGYADEKGPGAATMQALGLQQQHGGGGEVEEESSEMG EKTAARTRLSGLLWHGGSAYDAWFSCASNQVAQVLLTLPYSFAQLGMASGLLFQLFYG LLGSWTAYLISILYLEYRTRKERDKVDFRNHVIQWFEVLDGLLGRHWRNVGLAFNCTF LLFGSVIQLIGCASNIYYINDHLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLM TTYTAWYIAVASLIHGQVEGVAHSGPTSIVLYFTGATNILYTFGGHAVTVEIMHAMWR PQKFKAIYLLATVYVLTLTLPSASAAYWAFGDALLTHSNALALLPRTPWRDAAVVLML IHQFITFGFACTPLYFVWEKLVGLHGCPSLCKRAAARLPVVLPIWFLAIIFPFFGPIN SAVGSLLVSFTVYIIPSLAYMVTFRSPQSRQNAVERPPRFAGGWTGAYVINSFVVAWV LVVGFGFGGWASITNFVHQVDTFGLFAKCYQCPPHPAAAALSPPGAIAPAPASMLPPF NSTAAGIFAAPVPSPAPAPAPMHFVLGHHHHHRHHRHGL" BASE COUNT 378 a 682 c 601 g 445 t ORIGIN 1 gaacacacca cacacaccca cactggcagc agctcataca catagctagc tcagctgaga 61 cacacacaca cacagtgagt agttcagctc aaagctagca tcagcagcag agctaattaa 121 caaacatggc gtccgggagc agcggcggcg gctacgcgga cgagaagggg ccgggggcgg 181 cgacgatgca ggcgctgggg ctgcagcagc agcacggcgg cggcggagag gtggaagagg 241 agtcgtcgga gatgggggag aagacggcgg cgaggacgcg gctgtcgggg ctgctgtggc 301 acggggggtc ggcgtacgac gcgtggttca gctgcgcgtc gaaccaggtg gcgcaggtgc 361 tgctgacgct gccctactcg ttcgcgcagc tgggcatggc cagcggcctc ctcttccagc 421 tcttctacgg cctcctcggc agctggaccg cctacctcat cagcatcctc tacctcgagt 481 accgcacccg caaggagcgc gacaaggtcg acttccgcaa ccacgtcatc cagtggtttg 541 aggtgctgga tgggctactg gggaggcact ggaggaatgt gggactggcc ttcaactgca 601 cgtttttgct gttcgggtcg gtgatccaac tgatcgggtg tgccagcaac atctactaca 661 tcaacgacca tctggacaag cggacatgga cgtacatctt cggcgcctgc tgcgccacca 721 ccgtcttcat cccgtcattc cacaactacc gcatttggtc cttcctcggc ctcctcatga 781 ccacctacac cgcctggtac atcgccgtcg cctccctcat ccacggacag gtggagggtg 841 tggcgcactc tgggcccaca agcatcgtgc tctacttcac gggggccacc aacatcctct 901 acaccttcgg gggccacgct gtcaccgtgg agataatgca cgcgatgtgg cggccgcaga 961 agttcaaggc gatctacctg ctggcgacgg tgtacgtgct gacgctgacg ctgccgtcgg 1021 cgtcggcggc gtactgggcg ttcggggacg cgctgctgac gcactcgaac gcgctggcgc 1081 tgctgccgcg gacgccgtgg cgcgacgccg cggtggtgct catgctcatc caccagttca 1141 tcaccttcgg cttcgcctgc accccgctct acttcgtctg ggagaagctc gtcggcctcc 1201 acggctgccc ctccctctgc aagcgcgccg ccgcccgcct ccccgtcgtc ctccccatct 1261 ggttcctcgc catcatcttc cccttcttcg gccccatcaa ctccgccgtc ggctccctcc 1321 tcgtcagctt caccgtctac atcatcccct ccctcgccta catggtcacc ttccgctccc 1381 cgcaatcccg ccagaacgcg gtggagcggc cgccgaggtt cgccggagga tggacggggg 1441 cgtacgtgat aaactcgttc gtggtggcgt gggtgctggt ggtcggcttc ggcttcggcg 1501 ggtgggcgag catcaccaac ttcgtccacc aggtcgacac cttcggcctc ttcgccaagt 1561 gctaccagtg cccgcctcac cccgccgccg ccgccctctc gccgccgggt gccatcgctc 1621 cggcgccggc ctcgatgctg ccgccgttca actccaccgc cgccggcatc tttgccgctc 1681 cggtgccgtc tcctgctccg gctccggcac cgatgcattt cgtccttggt caccaccacc 1741 atcaccggca ccaccgccac ggcctctagc taattaatcg agatcaatca agatcatgat 1801 tatcagaggt tgggtttgca ttattgcact agtttttagc gagctactag ctagttgatc 1861 atcactgcaa gattgttaat tagcgctagt aattagtaaa agtaagcctc ttttcctaat 1921 cctattgtat gctttgcttc tttcttcttc ttctggttac tgagagagag tgagagtgag 1981 aatgtttggt ggtggggtat gcatgtcaga gacacgtttc aagtctctcg tcttgtaatg 2041 tgtccttttt gtgtggagct gcttttgaga aagaaagaag agagatcaaa tttaaaaaaa 2101 aaatgg //