LOCUS AK102224 2187 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033087M22, full insert
sequence.
ACCESSION AK102224
VERSION AK102224.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2187)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2187
/clone="J033087M22"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 1150..1809
/db_xref="Osa1:LOC_Os06g33940"
/note="(Rice Genome Annotation Project) NAC
domain-containing protein 76, putative, expressed"
/note="mapping to R06-TIGRv4S1-000730R (Chr.6: short
arm=19742868, long arm=19745354, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG95449.1"
/translation="MKKSYQRGLNPADMAAVDDDDLLHHHHHPFPPAQLHGGAADHKH
DGAGGHHHHHLMQPHHHYDDFPSFDPSMQLPQLMSADQPPPPPPSLLPGVPPSAAAAL
SSLDVECPQNLMKLTSAAAGGGATGLLHAGGDHRFATAATDWSILDKLLASHQNLDQL
FQGRVIAGASSPAAMAAPSHHQHLMDQLAGGGGGTASSLQRLPLQYLGCEAADLLRFS
K"
BASE COUNT 530 a 595 c 533 g 529 t
ORIGIN
1 gatcctcttc ctcttgtttt tcttgctgct tgtccctatc tttttgttgc attgaggagc
61 tgatgagctg agctaatcag ggcagaacaa aggcaggagg atatagtttt ccaagatcct
121 agggccggcc tgcatcaaaa agaaggatgc atccgagcgg cggcgcgctg tcggtgccac
181 cggggtttcg gttccacccg acggacgagg agctcctcta ctactacctg aggaagaagg
241 tggcctacga ggccatagat ctcgacgtca taagggagat cgacctcaac aagctcgagc
301 cctgggatct caaagatcgg tgcaggatag ggacggggcc tcagaacgag tggtacttct
361 tcagccacaa ggacaagaag tacccgacgg ggacgaggac gaaccgggcg acgacggcgg
421 ggttctggaa ggcgacgggg agggacaagg ccatcttcct cgccaacgcc tgccgcatcg
481 gcatgaggaa gaccctcgtc ttctacgtcg gcagggcgcc ccacggcaag aagaccgact
541 ggatcatgca cgagtaccgc ctcgaccaag acaacgtcga tgtccaggta tatatatata
601 tatatatata tatatatttg acatcagcaa aaaccatatg caacattaag ttcacgatat
661 acatacttag catccatgaa atgccaaagt catgcatgat atcacgactc atgagtactg
721 gtactccctc cgtccaaata tataagtatt tctagctatg aacttgaaca actgcgtgtt
781 tagattcata gctaaaagtt actatatttt gggacgaatt gcagttatgc tagttttgct
841 atttatcagt catctagaac tttgttattt tgtcagttac ctacatgaat ttgtgtgtac
901 tatgtatatg caattggtgg ttgatccaaa gagaataaag tttcaggctg agaattagta
961 aaaagggata tgtgtgttgt acagaaagat tcaccttcat ggaaccttgc atatatagct
1021 caagggtttc ttgctactga gattgatgaa ctaattaaca gcttaattaa tttactgaga
1081 ttcattgtct gatctgaaaa tgaaaataca tcattgcagg aagatggttg ggtggtgtgt
1141 agggtattca tgaagaagag ctaccagcga ggcctcaacc cggcggacat ggcggcggtc
1201 gacgacgacg acctcctcca ccaccaccac caccccttcc caccggccca gctccacggc
1261 ggcgccgccg accacaagca cgacggcgcc ggcggccacc accaccacca cctcatgcag
1321 ccgcaccacc actacgacga cttcccttcc ttcgacccct ccatgcagct cccccagctc
1381 atgagcgccg accagccgcc gccgccaccg ccgtccctcc tccccggcgt cccaccctcc
1441 gccgccgctg ccttgagctc cctcgacgtc gagtgccccc agaacctcat gaagctaacg
1501 tcggccgccg ccggaggcgg tgccaccggg ctgctccacg ccggcggcga ccaccgcttc
1561 gccaccgccg ccacggactg gtccatcctg gacaagctcc tcgcctcgca ccagaacctg
1621 gaccagctct tccagggcag ggtcatcgcc ggagcgtcgt cgccggctgc catggctgct
1681 cctagccacc accagcatct catggatcag ctcgccggcg gcggcggcgg caccgcctcg
1741 tcgttgcaga ggcttccact gcagtatctg gggtgcgagg cagccgacct gctcaggttc
1801 tccaagtaga gagattatcc ctccatgcat gcatggatca cttgaactaa gctagcttaa
1861 ttagctgcca ccgataaatg agcagttgat gatggtgatg atgatctgaa tgatcagctc
1921 atgttttttt ggttagactg gttaatttga tcttcctttt ggtatggagc ttaatgcttc
1981 caagtgtata tacactctat gctatgctat gctatgtttt cccatgtgca tgcatgcaaa
2041 tgtggctttg aaacctaatt atacatgcat gagaatactt aattaatatt tctgattttc
2101 ccatgcattt ttggatttaa gtgttgcttc ttaattagga tgcttcataa ttgctggctg
2161 atgaatgaga accgatatta atttacc
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