LOCUS AK102173 2525 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033086I18, full insert
sequence.
ACCESSION AK102173
VERSION AK102173.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2525)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2525
/clone="J033086I18"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 288..2186
/db_xref="Osa1:LOC_Os02g57650"
/db_xref="RAP-DB:Os02g0822400"
/note="(RAP Annotation release2) No apical meristem (NAM)
protein domain containing protein"
/note="(Rice Genome Annotation Project) NAC
domain-containing protein 78, putative, expressed"
/note="mapping to R02-TIGRv4S1-001606F (Chr.2: short
arm=35297324, long arm=35301360, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG95424.1"
/translation="MSQSPPDSSSAAAVPLAPGFRFHPTDEELVSYYLRRRILGRRLR
IDAIAEVDLYRLEPWDLPSLSRIRSRDAQWYFFARLDRKVTGAGAGGRGGPGNRTNRA
TPRGYWKTTGKDRDVHHRGKLVGMKKTLVFHSGRAPKGQRTNWVMHEYRLLDADGTQD
LHVVCRIFQKNGSGPQNGAQYGAPYLEEDWEEEDDAIENMPASGAFAEMAAVTDTADE
STEEDGNFSLKTNDEPLQTQEYQPEITPVKAQGSNEETNGGGYSCDVFSLDEILQEPE
NVCKNEEQNAIDDKFTIAELSGYPRQDDGYVGENGPVNWIDPSNGDNTNWPLRAYSTQ
NHVNGTLSADGFFDTVNGTNSYSGPSDNQNLYLQDDGLTSSHQVGDNMPFYDASSNHK
WVDGKDDYLNLNDLLYPPAENQPLFDAGDDLMAYFDATEDDFKFDIMGTEDSNSQLPD
MSNFVQKDDNNNKFTLDGISNTALYGASSSGSHGNMYPDTAVPDMPMDDTVDKSFGKR
LASMLGSIPAPPAMASEFPPSTGKSVVPLSAVNPSSSIRVTAGIIQLGGITFTGSTEH
LQKNGDFNLLLSFTVEGDVSTKSIGFEPDTQMSTTPMVLRSGMYLFFVSAMILMLSYK
VGLCIYSR"
BASE COUNT 620 a 666 c 596 g 643 t
ORIGIN
1 gctattatta ttttctttct catcacgcgg ctgcgtccgt atcgcgactt ttatcctctc
61 ctccccaact aactcggcgt tcgccatctc gtgtcgactt cctcctcaaa accctaattc
121 catccaccgc tcgatccaat ctaccctctc tctcgattct caattctcaa ttctccctgc
181 aaaattccca atcctccgtg cagaattaga attatgcggg attgatcccc tcccacggga
241 tctccaatat catatccatc cagaaattga aattcccctc gccgccgatg agccaatcgc
301 cgccggactc ctcctccgcg gcggcggtgc ccctggcgcc ggggtttcgc ttccacccca
361 ccgacgagga gctcgtctcc tactacctcc gccgccgcat cctcggccgc cgcctccgga
421 tcgacgccat cgccgaggtc gacctctacc gcctcgagcc gtgggacctc ccctccctct
481 cccgcatccg gagccgcgac gcgcagtggt acttcttcgc ccgcctcgac cgcaaggtca
541 ccggcgccgg ggccggcggc cgcggcggcc ccgggaacag gaccaaccgc gccacgccgc
601 gcggctactg gaagaccacc gggaaggacc gcgatgtcca ccaccgcggc aagctcgtcg
661 ggatgaagaa gacgctcgtc ttccactccg gtagggcgcc caagggccag aggaccaact
721 gggtcatgca cgagtaccgc ctcctcgacg ccgacggcac ccaggatctg catgtggtgt
781 gtagaatctt ccagaaaaat ggatctgggc cacaaaatgg tgcacagtac ggtgcgccat
841 acttggagga agattgggaa gaggaggatg atgcaattga gaacatgcct gccagtggcg
901 ctttcgctga aatggctgca gtcacagata ctgcagatga gtcgactgag gaagatggga
961 atttctccct taaaactaat gatgagcctt tacaaaccca agaataccag ccagagataa
1021 ctcctgtgaa agctcaaggt tcaaatgagg agaccaatgg cggtggttac agttgtgatg
1081 ttttttctct ggatgagatt ttgcaggaac ctgaaaatgt ctgcaaaaat gaagagcaga
1141 atgccattga tgacaagttc actatcgcag agttatctgg atacccaagg caagatgatg
1201 gctatgtagg cgagaatggt cctgtgaatt ggattgaccc ttcaaatggt gataatacaa
1261 actggccttt gagagcatat agtactcaga accatgtcaa tggaacactt agcgctgatg
1321 gtttctttga cacggtgaat ggtaccaact catattcagg tccttcagat aaccagaacc
1381 tgtatttgca agatgatggc ttgacttctt ctcatcaagt gggcgataac atgccatttt
1441 atgacgcatc atctaatcac aaatgggtag atggaaagga tgattatttg aatttgaatg
1501 acctcctcta cccgccagca gaaaatcaac ccctgtttga tgctggggat gacctgatgg
1561 cttacttcga tgccacggag gatgatttca aatttgatat tatgggcaca gaagattcta
1621 attctcaact tccagacatg tcgaactttg tccaaaagga tgataacaac aataagttta
1681 cattagatgg gatctctaat accgctttgt atggtgcttc ttcatctgga tcccatggca
1741 atatgtatcc agacactgca gtaccagata tgccgatgga tgacactgtt gacaaaagtt
1801 tcggaaagcg ccttgccagc atgctgggtt caattccagc tccacccgca atggcttcag
1861 agttcccgcc gagcacagga aaatctgttg tcccacttag tgctgtcaac ccgagtagct
1921 ctatccgtgt cactgcaggc attatccaac tcggtggtat cacttttact ggtagcaccg
1981 agcacctgca gaagaatgga gatttcaatt tgctcctctc tttcactgtc gagggcgacg
2041 tctcaaccaa atccattggt tttgaaccgg atacgcagat gagcaccacg ccaatggtgt
2101 tgcgcagcgg catgtatctt ttcttcgtat cggcgatgat tctcatgttg agctacaaag
2161 ttgggctgtg tatctacagc aggtaagtta tagtagtttt tgttgcccca ggctgtttat
2221 taaattgaag gagtcataca gagtccactc gacgtagagg gaactgcctg cgatttggac
2281 agtttggttc tttacattgt tatagttggt ataccgttct gacagttgaa agatacatag
2341 caataaactc tggaattgga gaaactagag ttacacgaat ttggtgctga aacttttgtt
2401 ggtggcatgt actgtataat ttactctatt tatttatttc acccaattct gggaggctgt
2461 aagcgttccc cgatcgatgt aagctgatct gaaacctgaa tacgcgctct tcatttttca
2521 taccc
//