LOCUS AK102136 2244 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033085H14, full insert
sequence.
ACCESSION AK102136
VERSION AK102136.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2244)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2244
/clone="J033085H14"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 544..1971
/db_xref="Osa1:LOC_Os06g49010"
/db_xref="RAP-DB:Os06g0703500"
/note="(RAP Annotation release2) Similar to SBP-domain
protein 5 (Fragment)"
/note="(Rice Genome Annotation Project) squamosa
promoter-binding-like protein 11, putative, expressed"
/note="mapping to R06-TIGRv4S1-001150R (Chr.6: short
arm=29702560, long arm=29707688, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG95406.1"
/translation="MASFGMNWNQKSPVFWDWENPAPFGPNTMENPKSIPHPEPRGVV
VAAANHGSTNSSGGTFTSSSELANGSSKSSLSASFDSSSKLGNSLEFRFASVKGHGKN
MCKDGEAGRVEDSGTSPAVAVSHGEPVIGLKLGKRTYFENVCGGQNVKSSSAASGVTC
PSTVVKKMKVSQQSTQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLER
RFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQEAISFGSSRLATMFYDARQQ
TDIYFGQSPFGQVRSNAISSCDNLGGFKFTEAKLPWMKPMKTIGLEDLNFSTLQMPGN
VVSHTVHHHDFDGLIPFKGNTPKVLNQGVDPACAVVSSNSNGAPDLRRALSLLSSDSW
GPADVQAGSQVHPGGVMPPLAVAAATVTAPTNPVSVMHALHPSTGGGGFWQDGDDPPP
LDHASQAQAFMHPGNGSSSGYGHLH"
BASE COUNT 567 a 530 c 573 g 574 t
ORIGIN
1 gcccaatgat caaatcaagc aaagcaccac tgctgctgca aagaacacca gatagatcaa
61 actctctctc tctctggtgt tgctgttagt tggtagtttg gtactacttg gtactctggg
121 aagaagaaag agattattat agcagaaaag cagcaccatg gcatagctcc aggcagcaaa
181 accagaatac aacggggata acgattctct ctcagctaaa ggaggtcggg gaaacaagtg
241 ggataggatc tctctcaagt cgaggtgagt gagaactcag ccaagaacaa caatggagtc
301 tctgttgctt tagttctgcc agccaattgg tttcaacttt caacgctgct acttgttatt
361 catcacctcc tcggatcggt ttgatttatg ctcaaggttg tgctatgcat ggtcatgctg
421 attgagggca agatttgcag ggagaggaag gatccactgt gtttcttttc tgggagaaag
481 gaaagttgag atttgcaata tatacaagtg tgagcagcag cagttgagat ccttaattca
541 gccatggctt cttttgggat gaactggaat cagaagagcc ctgtgttttg ggactgggaa
601 aatccagcgc ctttcggtcc gaatacaatg gaaaatccca agagcatacc tcaccctgaa
661 ccaagaggtg tagttgtcgc ggccgcaaat catggatcca ccaattcatc cggtggcacg
721 ttcacttcta gctcggagct agccaatggt tcatcgaaga gctccttgtc agcgtcgttc
781 gattcctcat ccaagctggg gaacagctta gagttcaggt ttgcttctgt caaagggcat
841 ggcaagaaca tgtgcaagga tggcgaggcc ggtagagttg aagactcggg cacttctcca
901 gctgtggcag ttagccatgg tgagccggta ataggactca agttagggaa gagaacttac
961 tttgaaaatg tttgtggagg gcagaatgtc aagagctcct ctgcagcttc aggtgtgact
1021 tgtccatcta ctgtggtcaa gaagatgaag gtgtctcagc agagcacaca aagctcatac
1081 tgccaagttg aaggctgcaa agtcgatctg tcctccgcaa gagaatacca tcgcaagcac
1141 aaagtttgtg aagctcattc taaggcacca aaggttattg tttctggtct ggagcgccgt
1201 ttttgccaac agtgtagtcg gtttcatggt ttagctgaat ttgaccagaa aaagaaaagt
1261 tgccgcaggc gtctatctga tcataatgca cgaagaagga aaccgcaaca agaggcaatt
1321 tcatttggtt catcaaggct cgccacgatg ttttacgatg caaggcagca gacagatatt
1381 tactttggcc aatctccttt tggccaagtg agaagcaatg caatttcttc atgtgacaac
1441 ctgggaggct tcaaatttac agaagcaaaa ctcccctgga tgaagccaat gaaaactata
1501 ggccttgagg atctgaattt ctctaccctg cagatgccag gcaatgttgt gtcgcatacg
1561 gtgcatcatc atgattttga tgggctcata ccattcaagg gaaacacccc gaaggtcctc
1621 aaccaaggtg tggatccagc ctgtgccgtc gtgtcctcca actcgaatgg agccccggat
1681 cttcggcgtg ctctctctct tctgtcaagc gattcctggg gcccggccga cgttcaggcc
1741 ggctcccagg tgcatcccgg tggagtgatg ccgcccctcg ccgttgccgc cgccaccgtc
1801 accgccccga cgaaccctgt cagtgtgatg catgctctgc acccgtccac cggaggagga
1861 ggattctggc aagacggcga cgacccgcct ccgctcgatc atgcctcgca ggctcaggcg
1921 ttcatgcatc ctggcaatgg cagcagctcc ggctatggcc atctgcactg attctgctgc
1981 atctatttgg aacgggttga tggctggtta ctccgttcat gatcttaccc tgtcagtgat
2041 ggactctgaa taatttgggg gcgaattgtc ctgcaacccc aggatttatt atttctattt
2101 ttgaaaccaa accaccagga tatttgccat tggatgagaa gtgttcatga tcatgaaatg
2161 atctgttttg ttccacagaa tctgacatat ctactactcg tcttgggaat gagctgagat
2221 cgattcgtgt gttgttcatt cagg
//