LOCUS AK102105 2637 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033084D07, full insert
sequence.
ACCESSION AK102105
VERSION AK102105.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2637)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2637
/clone="J033084D07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2637
/db_xref="Osa1:LOC_Os10g35560"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R10-TIGRv4S1-000547F (Chr.10: short
arm=18690288, long arm=18695772, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 700 a 566 c 645 g 726 t
ORIGIN
1 gtttggtcca caagagttaa caaaagcatc ccaccatctg aggaccttaa gaaccctcaa
61 tcatatgttc caatgccaac aacttcagat gagcggagtt cttctgagtg cagtgttgat
121 agggcgaacc gacttagctt tgacccttat gatcttccaa atgatgtcag acaattggcc
181 caaatagttt attctgctca tggtggtgag gttgcagttg cattcctgcg tggaggtgtg
241 cacatttttt caggtccaaa ctttgaacag gttgatagct atcatgtcaa tgttggctca
301 gcaattgctc caccagcctt ctcctccagt ggttgttgct tggcatcagt atggcatgac
361 acactcaaag atcgaaccat actaaagata atacgtgtgc ttcctcctgc aattcttaat
421 gctcagacaa aggttagctc agctgtttgg gaacgagcaa tagcagatag attttggtgg
481 agtctattgg ctggtgtgga ttggtgggat gctgttggct gcacacaaag tgctgctgaa
541 gatggtattg tctcactgaa cagtgtgata gctttgctgg acgcggactt ccattgtctt
601 ccaactatac aacagaggca acaacactgt cctaatcttg ataggataaa gtgtagattg
661 ttggaaggaa caaatgctca agatgtcaga gcacttgtgt tggacatgca agcaagattg
721 cttctggata tgcttggcaa gggaattgag tctgccctga taaatccatc aactctgcta
781 cctgaaccgt ggcaagcttc cagtgacatg ttatctagca ttgggcctga caaaatgact
841 gttgacccag ctctactttt aagcatccag gggtacgttg atgctgttct agatttagcg
901 tcacatttta tcacacgctt gcgacgctat gcgagcttct gccgaacttt ggctagccat
961 gcagttggag catcttctgg ttcaggcaat tctaggaata tggttacaag tccaaccaac
1021 agttctcctt caccttcaac taaccaaggt aatcaaggtg gagtagcgtc tacaacaggg
1081 agctcacaaa tgcaagagtg ggtccaaggt gccattgcta agattagtaa caatactgat
1141 ggtgctgcaa atgctgcacc aaatccaatt agcgggaggt catcattcat gcctattagc
1201 ataaatacgg gaacattccc tggcacacca gctgttagac ttattgggga ctgccatttc
1261 cttcatagat tatgtcagct gttgctattt tgtttgcttt ttcggagaag gcaatctcca
1321 aggatacctg caaatgcaca aaaaagttct gattctagca tgcagaaaca acacttgatg
1381 aacagtaaga cagaggataa tactttggca gtcagatctg gtctaggtgc tgccaaattg
1441 gaagatggca caacttcacg tggacagatg gttggagcaa agggtgctga agaaaatcca
1501 gtgggcaaca aatctgctag gataggttct ggcaatgctg gccaaggtta tacttcagac
1561 gaggtgaaag tcctttttct catattagtt gacctatgta aacggactgc aaccttgcaa
1621 catccgttgc cttcttctca ggttggttcg agcaatatta ttataaggct gcattacatc
1681 gatggcaatt acactgtgct ccctgaggta gtggaagcat ctcttggccc tcatatgcag
1741 aatatgcctc gtccacgtgg agctgatgct gctggccttc tacttcgaga attagaactg
1801 cagccccctg ctgaagaatg gcatagacgc aacatgtttg gtgggccatg gtcagaacca
1861 gatgatcttg gtccattgga taatacgcga cagctaaaaa tcaatggctc taccaatcgc
1921 cacttatcgg acatggaaga ggatggcgac agctcctttg ggattcaaaa tctttggcca
1981 agaaagcgcc ggttgtctga aagagatgca gcatttggtc tgaaaacatc cgtggggctg
2041 ggatcttttc taggtgtgat gggttctcgg agagatgtta ttacagctgt gtggaaaaca
2101 ggcctcgaag gtgaatggta caagtgcata cgatgtttga ggcaaacctg tgcatttgct
2161 cagcctggtg ctctagctcc gaacacgtcg aatgagcttg aggcatggtg gatcagccga
2221 tggacccatg cttgcccaat gtgcggtggg acatgggtga aagtcgtttg aatttgacgc
2281 ctccgggcga caccttcacc gtactaacca ctctgccaat agctttctcg gccaaatctg
2341 tgtaggcgcc atcggttttt ggacaatttt gtatctaact ttagattgtt tggtctcagg
2401 ccctccctgg tatggtatca tagtttacct gcagcagtca gagcagattg caccagcagc
2461 tgtgtaaaac ggtaggaaaa aacaggatta ggacatgccc aaacactgtc agagtcagca
2521 gttgtgttgt gcgatccttt tgtacataaa tgtagtgtac taatttgcaa cattggaaaa
2581 gaaactccgt tagatactgc ttgatgtcaa taatatttgc tggtgattga aaagacc
//