LOCUS AK102073 2984 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033082G16, full insert
sequence.
ACCESSION AK102073
VERSION AK102073.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2984)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2984
/clone="J033082G16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2984
/db_xref="Osa1:LOC_Os11g11410"
/db_xref="RAP-DB:Os11g0221000"
/note="(RAP Annotation release2) Aux/IAA_ARF_dimerisation
domain containing protein"
/note="(Rice Genome Annotation Project) OsIAA27 -
Auxin-responsive Aux/IAA gene family member, expressed"
/note="mapping to R11-TIGRv4S1-000272F (Chr.11: short
arm=6331360, long arm=6337777, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 851 a 666 c 596 g 871 t
ORIGIN
1 gatcaaccac tagtgcacca tcttatattc ttcctacata ttcattctcc ccacaacaac
61 aactaacact actcactctt cattgctttt ttttttctct ctctagctag ctagcttgct
121 tctacttctt cttcatcttg atcttgaaac tagtcttatc aatctgagga attaatccat
181 cattatgatg aatcttatat catttgaaac acctcctctt gggaggagga gtcaagatgg
241 aggcagcagc agcagcagca tcactgctgc tacaaccact accaacaagg caaaggaagc
301 agcaagccat ctagacctca gcctcggcat ctccttgtca cccggcggcg gcggcggcga
361 cgctggcacc aaggccagca gctgctgcta cggcggcggc ggcgacggcg gcggctgcat
421 gggcagtggc atgctcactg caggagttct tggcgttggg catgggggga gtagccatga
481 caatactacg gcgagcagcg gcggcggcgg cagctggacg gcggcgttca tgccgagccc
541 gacgggattc atgcacccgt ggagcctcgc cgcccggcag cagaaggccg ccgccgagca
601 ggagcggagc ggcgtcgcga ggctgccgcc ggcgacgacg acgtacatgc caagagctgc
661 cgcgaccgtg atttcactgc cggcggcagt tggctggcca ccggtgcaca catcccggcg
721 taacctcgtt gccaccataa ataatgtcct gaaacccgac actactgccg ccgtcaagcc
781 ggacagaccg acacaagcaa cggcgatgtt cgccgccgac gaaaccacgg cgcccccgcc
841 aaggagcgcg gcggcggcga ccgaggccag caggacattg aacatgtttg ccaaggtgca
901 catggatgtg tacaaggtgg gcaggaagat caacctcagg gcacaccgca actacgactc
961 cctccgtcgg gtcctcacca agatgactca taatttcttc tgccgtgagt accctatatt
1021 tcttttttac ttttttttaa ttactggata gacacagacg cacacacgta tcactagact
1081 cgtaacacca cacttacacc tccacaaata cactccctaa tatatcatta tctcattaaa
1141 ttctgagtgc cccatatttc aactctatct acaacaaagt gccttggtat catatctatc
1201 tgttctttaa ctccatagat atataatata tattttacaa gggaaatagg tagagttagt
1261 tatgtgtatg atttagggta gataccaaac acattaaaat gattctggtc ccgtgaccaa
1321 gatagaatta attaaaatgc agacatggcc catgaatcgt attatgtgac atgagcaaac
1381 taaacatagt ttggtcccac ctcatagagt cataggtttt gtctttttaa ggaaggttag
1441 agcatgctaa ttgtttaggt ccaattgaat ttacaggtca ccccttgagc agtcaaacaa
1501 gttcttcaaa ctctgtagta atttgtgcta gtccaactag cctctcaaga gttatttgct
1561 catttttctc catttgtttg aatgaacatg tcacaataat atcttgcaac tcaatagtta
1621 atttatatct tgcatgtttt tagaagagtc aaccatctcg gccctcgtga ttaccccatg
1681 attgtgctag gttttaattc atttaccttt aattaactat gccattgtaa gtttttctag
1741 tttgggtttt tttataaatt aaatcaaatc tattcttcta tagtaatttg cataagctcc
1801 ctaccctttt cgaaggttat gcgtacacgg aacatccaac ctataatgac ttggctagaa
1861 ataatatcta agtaaaaatg ttccaagtaa tgaagtgaat gctatattgc ttttggattt
1921 tttttattgt actactaata taaggtatta aaatgattgt tcaaaatact aagttctttt
1981 tcatttcaca aaattcagcc gcagattatt caagcacaaa taagggagaa gaagattgtg
2041 ctaaaagtga cgagttcata tttctatatg aagattttga gggcgaccga atgcttgttg
2101 gcgatgtccc atgggagtaa gtatttttgt taaaataatt gatagctttt ttattcacta
2161 ttgttgttac aaagtaatcc atctcactta agttgttgtc tcatgtacaa gttattgttt
2221 catgttaatt tgttacttca caaatgccat ccataataat atcgaaagtg taataaaatg
2281 tttctcgtat aagggtgcaa taacattctt ggggctcatg agggaaatat gttactatgt
2341 ctgactcact agttcattaa tattgtttgc acattcataa ttaataagat gtaaaaggag
2401 aaaaccttac tacacaatta gttttcgaat atacaacaac tttaaaatgc ccaagtaact
2461 gtgcaatttt gtaggttgtt ccttgcatca gcaaaaaggt tgtacattgc caaaaaccca
2521 gcacccagaa acaaaggtac ctacagacct cttgtctgga tatgcatgct gcttccaaaa
2581 gctccatatt gaaatgcttc ttttacgtgt ttgctgtgca attactttgc agaacatgct
2641 gaaatcgcca aaaggaaaga aactgaagat gcaatagata actgaaggca cctgaaaagc
2701 aagttgatct ctgcatatac tacaatatgc acttctcatg atctgacata tatagctctc
2761 gacttgtgct gttcatcttg tattataata agctatcttc gaagagtagg tttataatgt
2821 acggatgcat gttaaaatgc ttcttgatca ctgtgcatac aattttgcgg gcattaggta
2881 agtactctga aaaatgtact agacacggat tcagtatgtc tacacaaagt ggataagact
2941 cgtctaataa ttaactacgt tcttgcttgc tatattttcc atcc
//