LOCUS AK102000 2545 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033079M20, full insert
sequence.
ACCESSION AK102000
VERSION AK102000.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2545)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2545
/clone="J033079M20"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2545
/db_xref="Osa1:LOC_Os05g50410"
/note="(Rice Genome Annotation Project) sister chromatid
cohesion 1 protein 1, putative, expressed"
/note="mapping to R05-TIGRv4S1-001131F (Chr.5: short
arm=28806268, long arm=28813720, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 711 a 584 c 584 g 666 t
ORIGIN
1 gggtctgaac tcccacccca cgcaaccatc gcaaaaaccc cactccacct ctcacctgct
61 ctctccgccg ccgcagcggc gcagcgcctc cactctcact cgctcatcca ttccctccct
121 cctcacgatc gagaatgttc tactcgcacc agctcctcgc gcggaaggct ccgctcggcc
181 agatatggat ggcggcgacg cttcactcga agatcaaccg gaagcggctt gacaagctcg
241 acatcatcaa aatctggtga gcgaattagt ccgaatccag ttgtctctga tttcttcgtt
301 tcgaacttga cggttttttt tggggggatt ttgtgcgtgt ggtttttggg ttagtgagga
361 gattttgaac ccgtcggtac ccatggcact aaggctctcc ggaattctca tgggtggtgt
421 ggcgatcgtg tacgagagga aggtgaaggc tctgtatgat gatgtgtctc ggtttctggt
481 aaaattcgag ttcgattttc acctaatttt ggtgcctcct ccttgatcca tttgcctgtc
541 tatgctaaca tggttcagat tacgcttgta ctaactcctc acacagattg agatcaacga
601 ggcatggcgg gtcaagccag tcgcagaccc caccgtactt cccaagggca aaacccaagc
661 caagtatgaa gcagtaacac tgccagagaa tatcatggat atggatgtgg agcagcccat
721 gcttttctca gaggctgata ctacaaggtt ccggggaatg cgtttggagg atttggatga
781 ccaatacatt aatgtcaacc tagacgatga tgacttctcg cgcgctgaga atcatcacca
841 agctgatgca gaaaatatca ccctggctga taatttcggg tctgggcttg gagagactga
901 tgtgttcaat cgttttgaga gattcgacat aacagatgat gatgcaactt tcaatgtcac
961 tcctgatgga cacccacagg ttccaagtaa tctggttcct tctccaccta ggcaggaaga
1021 ctctcctcag caacaagaaa accatcatgc tgcctcatcc cctcttcacg aagaagctca
1081 acaaggtcaa ttcaaacaca tggtttggtc tatttgatcc taaatttgga aagggggggg
1141 catctgtaaa aaatgagcaa gagcagcaga agatgaaggg tcagcaacct gctaaatcat
1201 caaagagaaa aaaacgtagg aaagatgatg aggtgatgat ggataacgac cagataatga
1261 tcccaggaaa tgtatatcaa acatggctga aggatccatc aagcctcatt accaaaaggc
1321 acagaatcaa cagtaaagtt aatcttattc ggtcaatcaa gataagagac ctcatggact
1381 tgcccctcgt ttctctaata tcttccttgg agaagtcacc cttagaattt tattatccta
1441 aggaacttat gcagctttgg aaggaatgta ctgaagtcaa gtccccaaaa gctccatctt
1501 caggagggca gcagtcatca tcaccagaac aacagcaaag aaacttgcct cctcaggcat
1561 ttccaaccca gcctcaggtt gataatgaca gggaaatggg atttcaccca gtggactttg
1621 cagatgacat cgaaaaactc cgaggaaaca ctagtgggga atatggaaga gattatgatg
1681 cttttcacag tgatcatagt gttactcctg gaagtcctgg gctaagtcgc aggtctgctt
1741 caagctctgg tggctctgga cggggattta cgcagttgga tccagaagta cagttgccat
1801 ccggaaggtc caagaggcag cattcatctg gaaaaagctt tgggaacctc gatccagttg
1861 aagaagaatt cccattcgag caagaactta gagatttcaa gatgagaagg ctttcagatg
1921 ttgggccaac tccagacctg ctggaagaaa tcgaacctac tcaaacccca tatgaaaaga
1981 aatccaatcc tatcgaccag gtcacacaat caatccactc gtacctcaag ctacactttg
2041 acaccccagg ggcctcacag tctgaatcat taagtcagct agcacatggg atgactacag
2101 caaaggctgc ccgactcttc tatcaagcat gcgttttagc aactcatgat tttatcaagg
2161 ttaaccagct ggaaccatac ggagacatct tgatctcgag gggaccaaag atgtgacatc
2221 ctaaatgttt aatagttgga caattttctg ctgttgtggt tcttgcacat ctcgtgttat
2281 gtatggtgtt taagtttgca catgaagttt agaaaaactt cgaaggaagg cttgtaggta
2341 cgttgtattg gggcatgtat ttaacactag ttttgtgtag gaaagaaatt ttgtaagtat
2401 gctgaatggc ttgatagctg gtgcaaggtt aaagttatac gatacctttc tttctgtata
2461 tttaagatga tgaaataact ggttttacct cttacctggt gtttgatgca ctttcttgac
2521 aattacgtgt aatttttgaa cattc
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