LOCUS AK101985 1821 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033078N24, full insert
sequence.
ACCESSION AK101985
VERSION AK101985.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1821)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1821
/clone="J033078N24"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1821
/db_xref="Osa1:LOC_Os05g38150"
/note="(Rice Genome Annotation Project) delta
1-pyrroline-5-carboxylate synthetase, putative, expressed"
/note="mapping to R05-TIGRv4S1-000770R (Chr.5: short
arm=22292884, long arm=22297634, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 524 a 330 c 470 g 497 t
ORIGIN
1 gatctatccc ccctctactc gcggctgcgg cggcaaggcg gcgagacgtg ggagagggat
61 ttacaggtag agggagaggg tggaggagga gaggctgagg ctaggaagcg gtttcgccat
121 ggcgagcgtc gacccgtccc ggagcttcgt gagggacgtg aagcgcgtca tcatcaaggt
181 gggcactgca gttgtctcca gacaagatgg aagattggct ttgggcaggg ttggagctct
241 gtgcgagcag gttaaggaac tgaactcttt aggatacgaa gtgattttgg tcacctcagg
301 tgctgttgga gtggggcgac agcgacttag gtaccggaag cttgtcaata gcagctttgc
361 tgatctgcaa aagccacaga tggagttaga tggaaaggct tgtgccgctg ttggtcagag
421 tggactgatg gctctttacg atatgttgtt taaccaactg gatgtctcgt catctcaact
481 tcttgtcacc gacagtgatt ttgagaaccc aaagttccgg gagcaactca ctgaaactgt
541 tgagtcatta ttagatctta aagttatacc aatatttaat gaaaatgatg ccatcagcac
601 tagaaaggct ccatatgagg attcatctgg tatattctgg gataatgaca gtttagcagg
661 actgttggca ctggaactga aagctgatct ccttattctg ctcagtgatg tggatgggtt
721 gtatagtggt ccaccaagtg aaccatcatc aaaaatcata cacacttata ttaaagaaaa
781 gcatcagcaa gaaatcactt ttggagacaa atctcgtgta ggtagaggag gcatgacagc
841 aaaagtgaag gctgctgtct tggcttcaaa tagcggcaca cctgtggtta ttacaagtgg
901 gtttgaaaat cggagcattc ttaaagttct tcatggggaa aaaattggta ctctctttca
961 caagaatgcg aatttgtggg aatcatctaa ggatgttagt actcgtgaga tggctgttgc
1021 cgcaagagat tgttcaaggc atctacagaa tttgtcatca gaggaacgaa aaaagatatt
1081 gctagatgtt gcagatgctt tggaggcaaa tgaggattta ataaggtctg agaatgaagc
1141 tgatgtagct gcggcccaag ttgctggata tgagaagcct ttggttgcta gattgactat
1201 aaaaccagga aagatagcaa gccttgcaaa atctattcgt acccttgcaa atatggaaga
1261 ccctataaac cagatactta aaaagacaga ggttgctgat gatttagttc ttgagaaaac
1321 atcttgccca ttaggtgttc tcttaattgt ttttgagtcc cgacctgatg ccttggttca
1381 gattgcatct ttggcaattc gaagtggtaa tggtcttctc ctaaaaggtg gaaaagaagc
1441 tatcagatca aacacgatat tgcataaggt tataactgat gctattcctc gtaatgttgg
1501 tgaaaaactt attggccttg ttacaactag agatgagatc gcagatttgc taaagcttga
1561 tgatgtcatt gatcttgtca ttccaagagg aagtaataag cttgtctctc aaatcaaggc
1621 gtcaactaag attcctgttc ttgggcatgc tgatggtata tgccacgtat atattgacaa
1681 atcagctgac atggatatgg caaaacatat tgtaatggat gcaaaaattg attacccagc
1741 agcctgcaat gcaatggaga ccttactagt tcataaggat cttatgaaga gtccaggcct
1801 tgacgacata ttagtagcac t
//