LOCUS AK101949 1575 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033075D23, full insert
sequence.
ACCESSION AK101949
VERSION AK101949.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1575)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1575
/clone="J033075D23"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 94..1098
/db_xref="Osa1:LOC_Os03g08470"
/db_xref="RAP-DB:Os03g0183000"
/note="(RAP Annotation release2) Similar to AP2 domain
containing protein RAP2.6 (Fragment)"
/note="(Rice Genome Annotation Project) root abundant
factor, putative, expressed"
/note="mapping to R03-TIGRv4S1-000258R (Chr.3: short
arm=4327852, long arm=4329646, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG95309.1"
/translation="MCGGAILAEFIPAPSRAAAATKRVTASHLWPAGSKNAARGKSKS
KRQQRSFADVDDFEAAFEQFDDDSDFDDAEEEDEGHFVFASKSRVVAGHDGRAAARAA
SKKKRGRHFRGIRQRPWGKWAAEIRDPHKGTRVWLGTFNTPEEAARAYDVEARRLRGS
KAKVNFPATPAAARPRRGNTRATAVPPPATAPAAAPPRGLKREFSPPAETALPFFTNG
FVDLTTAAAPPPAMMMTSSFTDSVATSESGGSPAKKARSDDVDSSEGSVGGGSDTLGF
TDELEFDPFMLFQLPYSDGYESIDSLFAAGDANSANTDMNAGVNLWSFDDFPIDGALF
"
BASE COUNT 336 a 473 c 457 g 309 t
ORIGIN
1 gaaaggcatt cgcaacacac acttgaagaa aaaaaacacg acgaacacgt taaaaaaagg
61 tcgaagagaa gtgggagacc caaaccgcga acaatgtgtg gaggcgccat cctcgccgag
121 ttcatcccgg cgccgtcgcg cgccgcggcg gcgaccaagc gggtgaccgc cagccacctg
181 tggccggccg gctccaagaa cgccgcccgc ggcaagagca agagcaagag gcagcagagg
241 agcttcgccg acgtcgacga cttcgaggcc gccttcgagc agttcgacga tgactccgac
301 ttcgacgacg cggaggaaga agacgaagga cacttcgtgt tcgcgtccaa atctcgtgtc
361 gtcgccgggc acgacgggcg cgcggcggcg agggcggcga gcaagaagaa gcgggggcgg
421 cacttccgag gcatccggca gcggccatgg gggaagtggg cggcggagat ccgcgacccg
481 cacaagggca cgcgcgtctg gctcggcacg ttcaacaccc cggaggaggc cgcacgcgcc
541 tacgacgtcg aggcgcgccg cctccgcggc agcaaggcca aggtcaactt ccccgccacg
601 cccgccgccg cgcgccctcg ccgtggcaac acgagagcca ccgccgtgcc accgccggcg
661 acagcacccg ccgccgcccc gccgcgcgga ctgaagcgag aattctcgcc gcctgctgag
721 accgcgctac ctttcttcac caacggcttc gtcgacctga cgaccgccgc ggcgccgcca
781 ccggccatga tgatgacgag ctccttcacc gacagcgtcg ccacgtcgga gtccggcggg
841 agccccgcca agaaggcgag gtccgacgac gtcgactcgt ccgagggcag cgtcggcggc
901 ggcagcgaca cgctgggttt caccgacgag ctggagttcg acccgttcat gctgttccag
961 ctcccctact ccgacggcta cgagtccatc gacagcctct tcgccgccgg cgacgccaac
1021 agcgcgaaca ccgacatgaa cgccggcgtc aacctgtgga gcttcgacga cttcccaatc
1081 gacggcgccc ttttctgatg tactcctcca ttgatgcagt ttgtgcactc aattgttaat
1141 cacgtcgtcg ttgatgaatg tttaaccgga ggatgatggg gtgcagctga tatcatggct
1201 tgcttgatta ccgaattata ttgcggtgtt tgtgtttgtc aattagattc tgaatctgta
1261 ctactgccga tcttatgatc aaaactatat attaagttta tgtactctta atttgtgggc
1321 tacttttacg gggtcttcgt actgctggtc aaatagtcct atgaaatcga tcatgtcggc
1381 aatatcgtcg tcaattatcg tggtcgtggt tgttaatgat gtcaaataag tctatgaaaa
1441 cctggtcctc ttggtgttta tgtaccactg atcgatccat catttgatct ctgtcatgtt
1501 gagatggatc gtgtaagaat atcataattt gctggattca gtccagtcgt aatgtatttt
1561 ggtttgtaca actgc
//