LOCUS AK101684 1412 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033058N01, full insert
sequence.
ACCESSION AK101684
VERSION AK101684.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1412)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1412
/clone="J033058N01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 192..1106
/db_xref="Osa1:LOC_Os07g41720"
/db_xref="RAP-DB:Os07g0608200"
/note="(RAP Annotation release2) Similar to CCAAT-binding
transcription factor subunit B (CBF-B) (NF-Y protein
chain A) (NF-YA) (CAAT-box DNA binding protein subunit
A). Splice isoform Short"
/note="(Rice Genome Annotation Project) nuclear
transcription factor Y subunit A-3, putative, expressed"
/note="mapping to R07-TIGRv4S1-000819R (Chr.7: short
arm=24995044, long arm=24999520, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG95184.1"
/translation="MLMLLRQMEDHRAHTTPNYDFFSGDYQMKQLGHKMYDQDSPSSD
SGQSHQEESAMNDSSPNERHTSTQSDNDDGHQMPDQDKTKSVSSLGNPGALPPKLNYS
QSFACIPYTADAYYGGVLTGYSSHAIVHPQQNGTANSRVPLPVEPAAEEPIFVNAKQY
HAILRRRQIRAKLEAQNKLVKGRKPYLHESRHRHAMKRARGSGGRFLNTKQLEEQKQQ
QEEEAASGGASSGNRTCLQNGTGSAPSASSPSEIASVSTSREFLGNHEQSHFPSAGFL
PTMSFRAQNGGDGKLVANAIHQRVSMMR"
BASE COUNT 393 a 338 c 334 g 347 t
ORIGIN
1 gatagagcac agtcctctcc tcttccccgt gctccccatt tctgcttctt ttcccacaaa
61 tttctctctc tatctcagaa aggattcggg agacttgaag agaggagctc gaagcgggac
121 aggagagaga ggctaattat agaagtacac gaagaaaaat ggtgcctgga ccaaagtgag
181 accatctcat aatgctaatg cttttgcgac aaatggaaga tcatcgagcc catactacgc
241 ccaactatga ttttttctct ggagattatc agatgaagca gttaggtcat aagatgtatg
301 atcaagattc cccgtcaagc gattctggac agtcacacca agaagaatct gccatgaatg
361 atagcagtcc aaatgagcga catacctcaa cacaatctga caatgatgat ggtcatcaga
421 tgccagatca ggacaaaaca aagtcagtat catcgttggg gaatccagga gctttgcctc
481 caaagctcaa ctatagccaa tcctttgctt gtattcctta tacagctgat gcatactatg
541 gtggggtctt gactggatat tcttcacatg caattgttca tccccagcaa aatggtacag
601 ctaactcccg ggtgccgttg cctgttgagc ctgcagcaga agagccaata tttgtaaacg
661 caaagcagta ccatgcaatt cttaggagga gacagatacg agctaaattg gaggcccaaa
721 ataagttggt gaaaggtcgg aagccatacc tccatgaatc tcggcatcgc catgccatga
781 agcgagctcg tggatctgga gggcgcttcc tcaacacaaa gcagctcgag gagcagaagc
841 agcaacagga ggaggaggcc gcatccggtg gcgcgagctc tggcaatagg acatgccttc
901 agaatggcac cggtagcgcg ccttcagctt cctctccctc tgaaatcgcg agcgtctcaa
961 ccagcagaga attccttggt aaccatgagc agagccactt cccctcagct ggcttccttc
1021 ccacaatgag cttcagagcg cagaatggcg gagatgggaa gctggtcgcg aacgccattc
1081 accagcgcgt ttccatgatg aggtgaggtg aagaggggtg aagtgggttc agctcagcac
1141 catcactttg gctctctccc tgctggtggc aattcatcct tggcttatga aaatacctta
1201 tgggaaaaaa aaaagtagtt tcatcctcaa atggaccaaa catgtgtggc tccattttaa
1261 gttttcctgt aactaaaagc actgcaatga tcaactgact gttggttctg tttgtggatg
1321 cttatatctg tacttgctgt atctaatact gaactctaag ttgaaaccct gaaactgatg
1381 gtccccgtga atattgtagc ttgcatttta tc
//