LOCUS AK101598 2103 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033051H11, full insert
sequence.
ACCESSION AK101598
VERSION AK101598.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2103)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2103
/clone="J033051H11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 558..1793
/db_xref="Osa1:LOC_Os02g47230"
/db_xref="RAP-DB:Os02g0700700"
/note="(RAP Annotation release2) Disease resistance/zinc
finger/chromosome condensation-like region domain
containing protein"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R02-TIGRv4S1-001218R (Chr.2: short
arm=28820868, long arm=28827764, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG95144.1"
/translation="MLACIACSTKDGGEGGHRSATATPNSGKSLTSQLKDMVLKFSGS
GRHQYKSGGSPSLRTSRFHRSSRLAAYPGIIDESGFTSDGAGEAYTYMRTTTASAGAR
AAPSTWDLPPKVNHRSFQPRVIRSPSASGVPSIGEEDYDDDDDDDDEETVLLEEDRVP
REWTAQVEPGVQITFVSIPGGAGNDLKRIRFSREMFNKWEAQRWWGENYDRVVELYNV
QTFSRQQGFSTPTSSVDEAMQRDSFYSRVGSTRESPAMMMPPPPPLPSSGAGREHPIS
RTASSKAQLSSSSSVAAARPPFYPSTAVPDPSDHVWAHHFNLLNSAAAGPAAPYDPSR
GTTSSRDEASVSISNASDLEATEWVEQDEPGVSITIREFGDGTRELRRVRFSRERFGE
ERAKVWWEQNRDRIHAQYL"
BASE COUNT 395 a 629 c 691 g 388 t
ORIGIN
1 gctgctttcg ctcgatttcg ggggcggatc agacggccgc gagcgaatcc ggggatctcc
61 cccctccctc ccgctctgtt cctgcctctg ctccccgccc gtttcctctc aatccttcct
121 tctccctgct tctctccctc gcggaaaaaa aaaagaaaag aaaaggaaaa gggggagtgg
181 aaaagatctc ctcttcgtcc tgtttctgtt ggcgtcgctg ctcggcagct cgttcgctag
241 ctaccaccca aaaggcggca gtcgatcgcc tgatagctca gccgctctcc tctgtcgctt
301 ccgagctctt gtgccgccgc gcgccggcga ggatctgtcg accgagagag gagccacccg
361 ccgtccaaga agaggaggaa gaagatcatc tttgcgtcag aaggagcagt gacgagatac
421 cactgtccgc gtggtcacaa gcattgctgc gagactgtga ttggcgggag ttgctttgga
481 tgagcaatag cctgatggtg gcttgctaac tgggaaggag gatttgcgcg gttctggact
541 actcgagagg ctaggaaatg cttgcgtgca tcgcgtgttc gaccaaggac ggcggggagg
601 gcgggcaccg gtccgccacc gccacgccca actccggcaa gtctctgact tcacagttga
661 aggacatggt gctcaagttc tccggcagcg gcaggcacca atacaagtcc ggcgggagcc
721 cgtcgttgag gaccagccgc ttccaccgct ccagccgcct cgccgcgtac ccgggcatca
781 tcgacgagtc gggcttcacg tcggacgggg ccggcgaggc ctatacttac atgaggacga
841 cgacggcgag cgccggcgcc cgggccgcgc cgtcgacgtg ggacttgccg cccaaggtga
901 accaccgcag cttccagccg cgcgtgatca ggagcccgag cgcgagcggg gtaccgagca
961 tcggggagga agactacgac gacgacgacg acgacgatga cgaggagaca gtcctcctgg
1021 aggaggaccg cgtgccgcgg gagtggacgg cgcaggtgga gcccggcgtg cagatcacct
1081 tcgtctccat ccccggcggc gccggcaacg atctgaagcg catccgtttc agccgggaga
1141 tgtttaacaa gtgggaggcg cagcggtggt ggggggagaa ctacgaccgc gtggtggagc
1201 tctacaacgt gcagacgttc agccggcagc agggcttctc gacgccgacg tcctccgtcg
1261 acgaagccat gcagagagat tcgttctact cccgcgtcgg ctcgacgagg gagagcccgg
1321 cgatgatgat gccgccgccg ccgccgctgc cgtcgtcggg tgctggcagg gagcacccga
1381 tcagccggac agcgtcgagc aaggcgcagc tgtcgtcgtc gtcgtcggtg gcggcggctc
1441 ggccgccgtt ctacccgtcc acggccgtgc cggacccgtc cgaccacgtg tgggcgcacc
1501 acttcaacct cctcaactcc gcggccgccg gaccagcggc gccgtacgac ccgtcgcgcg
1561 gcacgacgtc gtcccgggac gaggcgtccg tgtccatcag caacgcgagc gacctggagg
1621 ccacggagtg ggtggagcag gacgagcctg gggtgtccat caccatccgc gagttcggcg
1681 acggcacccg cgagctccgc cgcgtccggt tcagccgcga gagatttggc gaggagcggg
1741 ccaaggtgtg gtgggagcag aaccgggacc ggatacacgc gcagtatctg tgagctaacg
1801 cgagacccat cgttgatgag agtgaagtga tactgtgaca gaagctaacg cgtcgccggg
1861 aagaatagtt aagagtgtga tgatactact actttgccgc tgctacggtt agtgctacta
1921 ggtttttttt acagggtgaa tataggatga gggggaagga tgctgtggtc tgagaagcag
1981 caggctcagt caagctgcta ctcttgttaa ctgaccactt tggtcttccg tttgtaacct
2041 ttatggacag ggtgttcgtt taattcgttt gttttagcat ggtttcatgt gatcctcgac
2101 ggc
//