LOCUS AK101563 2264 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033050E18, full insert
sequence.
ACCESSION AK101563
VERSION AK101563.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2264)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2264
/clone="J033050E18"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2264
/db_xref="Osa1:LOC_Os04g53540"
/note="(Rice Genome Annotation Project) homeobox protein
GLABRA2, putative, expressed"
/note="mapping to R04-TIGRv4S1-001116R (Chr.4: short
arm=31681152, long arm=31684616, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 419 a 666 c 721 g 458 t
ORIGIN
1 gcggccccgc cgccctcggc gagatgtcct tcgacgagca ccacctccgc atcgagaacg
61 cccgcctccg cgaagagatc gataggatat cggcgatcgc ggcgaagtac gtggggaagc
121 caatggtgcc gttcccggtg ctgtcgaacc cgatggcggc ggcggcgtcg cgggcgccgc
181 tggacctccc cgtggcgccg tacggcgtgc cgggcgacat gttcggcggc ggtggcgccg
241 gggagctgct gcgcggggtg cagtcggagg tcgacaagcc gatgatcgtg gagctcgccg
301 tggcggcaat ggaggagctg gtccgcatgg cgcagctgga cgagccgctc tggagcgtcg
361 cgccgccgct cgacgccacg gcggcggcga tggagacgct cagcgaggag gagtacgcgc
421 gcatgttccc ccgagggctc ggccccaagc agtacgggct caggtcggag gcgtcccgcg
481 acagcgccgt cgtcatcatg acgcacgcca acctcgtcga gatcctcatg gacgcgaatc
541 agtacgcggc agtgttctcg aacatcgtgt cgagggccat cacgctggag gtgctgtcca
601 ccggcgtcgc ggggaactac aacggtgcat tgcaagtgat gtcagtggag tttcaggtgc
661 catcgccact ggtgccaacg agagagagct acttcgtgag atactgcaag cagaacgcag
721 acgggacatg ggccgtcgtc gacgtctcgc tggacagcct ccgccctagc cccgtcctca
781 aatgtcgccg ccgtccgtca ggctgcctca tccaagaaat gcccaatggc tactccaagg
841 tgacgtgggt ggagcatgtg gaggtggacg acaggtcggt gcacaacatc tacaagctgc
901 tggtgaactc cgggctggcg ttcggcgcgc ggcggtgggt cggcacgctg gaccgccagt
961 gcgagcgcct cgccagcgtc atggccagca acatccccac cagcgacatc ggcgtgatta
1021 cgagctcgga ggggaggaag agcatgctga agctggcgga gaggatggtg gtgagcttct
1081 gcggcggcgt gacggcgtcg gtggcgcatc agtggacgac gctgtccggc agcggcgccg
1141 aggacgtccg cgtcatgacg aggaagagcg tcgacgaccc cgggaggccc cccggcatcg
1201 tcctcaacgc cgccacctcc ttctggctcc ccgtccctcc caagcgcgtc ttcgacttcc
1261 tccgcgacga atcctctcgc agtgagtggg acatcctctc caatggcggt atcgttcaag
1321 aaatggccca catcgccaat ggccgggatc agggcaactg cgtctcactt cttcgcgtca
1381 acagctcgaa ctcgaaccag agcaacatgc tgatcctgca ggagagctgc acggacgcgt
1441 cggggtcgta cgtcatctac gcgccggtgg acgtggttgc gatgaacgtc gtgctaaacg
1501 gcggcgaccc ggactacgtc gcgctgctgc catcgggctt cgccatcctg cccgatgggc
1561 cggcgcacga cggtggcgac ggcgacggcg gcgtcggcgt cggctccggc gggtcgctgc
1621 tgacggtggc gttccagata ctggtggact ccgtcccgac ggcgaagctc tcgctggggt
1681 cggtggcgac ggtgaacagc ctcatcgcct gcacggtgga gcgcatcaag gcggccgtct
1741 ccggcgagag caatccgcag tagcttcgtc cttgaatcaa acaaaagctt cttgtgcttt
1801 caatttcagg agcagcaaaa ttttggagct ttcatcagtg ggaagtcaag aacgcacctc
1861 agactgtcct tgccatgtgg tgcccatata tagtttggat tatttttcgc tagtttttcc
1921 gcaaattcgg gaaatttcaa aaaaaatgtg tcaccactac gcaagggcgg ttggttcggg
1981 tattgacttc ctcttcatgt tcgcctctcg gatgctgcta ccttatgaat ttagggttct
2041 tctggagtac aaaaaaaacc ccttaatttg atctgtaatt tctgttgttc agacttccca
2101 gtacctagct agctagtagg agttgcagaa tagagatctg tgtccctgtc ttatactttt
2161 agttcacttc agtgtttgat cagtgctgtt tcaatccaaa attgtgtgtg ctgtgcttgt
2221 tattagttct tccttgctgc ttcaatgaag gcgatgttaa ttcc
//