LOCUS AK101537 2154 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033048E22, full insert
sequence.
ACCESSION AK101537
VERSION AK101537.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2154)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2154
/clone="J033048E22"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2154
/db_xref="Osa1:LOC_Os02g01280"
/note="(Rice Genome Annotation Project) ruBisCO large
subunit-binding protein subunit beta, chloroplast
precursor, putative, expressed"
/note="mapping to R02-TIGRv4S1-000014F (Chr.2: short
arm=158682, long arm=163593, direction=forward) for TIGR
Pseudomol ver4"
BASE COUNT 626 a 378 c 589 g 561 t
ORIGIN
1 gggcgatctt tgcttaaacc ctaatctcag acgctgcctt tgagagagga gaggggggag
61 atcttcttct tcgcttacgg cgggtgcaga caatatggcc tcagcattcg ggagcacctc
121 agcatgtggc atcaagatca ctcctaccgc ttttgccacc aagaaacatc tttgcctggt
181 tccaccccca gtcgtttcac ttccccagaa aaataggcct cagaggaagt gtaatttcag
241 agtaaatgct gccaaagagt tatatttcaa caaggatggg ttggctatca agaagctgca
301 aaatggagtc aataagcttg ctgatctcgt tggagtcacc cttggtccaa aaggacggaa
361 tgttgtcctt gagagcaagt atggatcacc taaaattgtc aatgatggtg ttaccgttgc
421 aaaggaggtt gagctggagg accctgttga aaatattgga gccaaattag tccggcaagc
481 tgcagccaag acaaatgatt tggctggtga tgggacaacg acttctgttg tccttgctca
541 agggatgatc acagagggtg ttaaggttgt ggctgctggt gctaatccag tacagattac
601 ccgtggtata gagaaaacgg ccaaagcact tgtgagtgaa ctccaaaaaa tgtccaagga
661 ggttgaagac agcgaacttg ctgatgttgc tgcggtaagt gctggaaata actacgaaat
721 tggcaacatg atagctgaag ctatgaacaa ggttggacga cagggggtgg tcacacttga
781 agaaggaaag agtgctgaaa ataatctcta tgttgttgag ggaatgcaat ttgatcgcgg
841 ctatatttct ccctactttg taactgacag tgaaaaaatg tcagtggagt atgagaattg
901 caagttgctc cttgtggaca agaaaatcaa caatgccaga gatcttataa caattctgga
961 ggatgctatt aggggtgggt acccaatcct aatagttacg gaggatattg agcaggaagc
1021 tcttgcaact cttgtggtca acaggcttag gggtgcattg aagattgctg ctattaaagc
1081 tcctggtttt ggagaacgca agagtcaata ccttgatgat attgctactc ttactggagg
1141 tactgtcatc agggaagaag ttggcttgtc cctagacaaa gctgatagag atgttctagg
1201 aacggccgcc aaggttgtag ttaccaagga ttcaacaaca atagttgggg atggtactac
1261 ccaggacgaa gtaaacaaaa gggtgacaca aatcaagaac cagattgagg ttgctgaaca
1321 ggaatatgag aaagaaaaac tgaatgagag aatagctaag ctctctggtg gtgttgctgt
1381 catccaggta ggagcacaga cagaaactga gcttaaggaa aagaaactga gggttgaaga
1441 tgcactgaat gcaaccaagg cggctgttga ggaaggtatt gttgttggag gtggctgtac
1501 gcttttgcgg cttgcatcaa aagttgatgc cattatagaa acacttgaga atgatgaaca
1561 gaaggttggg gctgaaatcg taaggaagtc cttgagttac ccacttaaat taatagcaaa
1621 aaatgctggt gttaacggca gtgttgttac tgagaaggtc cttgccaatg ataacttcag
1681 gtatggttac aatgccgcta caggaaaata tgaggatttg atggctgctg gtattattga
1741 tcccaccaag gtggtgagat gttgcttgga gcatgctgcg tcggtggcga aaacattcat
1801 cacatcagat gctgttgtgg tggacatcaa ggagcctgag aaagcagctg ctgctgggaa
1861 cccaatgggt ggatcaggtt ttggatttta gtttagaaga agaggagtac cctttttggc
1921 agttggcaac catttttaca ctggaggcag gcagaatttc acagttgcat ctgagacgtt
1981 ttttcttttc ctgtgtgtaa ttgttgcgta cgtcaatgtg gcagatgaga ggagtagtag
2041 gttatgaatg gccagcatta tgacagttta ttgttgctcg accttacaga agagctgaaa
2101 cagtgcaaca taatgttttt aaggttgaga attatgcaag ctgaagtagt tggt
//