LOCUS AK101486 2444 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033041M21, full insert
sequence.
ACCESSION AK101486
VERSION AK101486.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2444)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2444
/clone="J033041M21"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 1961..2311
/db_xref="Osa1:LOC_Os03g16130"
/db_xref="RAP-DB:Os03g0268200"
/note="(RAP Annotation release2) Protein kinase-like
domain containing protein"
/note="(Rice Genome Annotation Project) ATP binding
protein, putative, expressed"
/note="mapping to R03-TIGRv4S1-000523R (Chr.3: short
arm=8875496, long arm=8881032, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG95084.1"
/translation="MEIESQFLVQMEYAEELANTIGQTVDATEMPDAIEIIFQTALNL
GRHGGVDEMMGKSASAMVLYSKAVSMLRFLLTEAPSLALNPALSLTRDDRRRLRTYIE
AVNARLVPLQYQRH"
BASE COUNT 635 a 585 c 619 g 605 t
ORIGIN
1 ggcgagtaga gacctggccc tcctcccctt ttctctctct gttccgcgcg gcgagataat
61 tcggttgctt ctccccgcgg ccgcggcggc atctctcccg gcggcggcgg agctcacgtc
121 cttcgcggcg aactgcgctc caggcagcgg gaccagaggg gatgggggac cgcgccgcgg
181 ggagcggcgg cgggggaggg ggaggaagcg gcgtgcggag ggtaggggac tacgtgctgg
241 tgcggcagat cgggtcgggg gcgtacgcgc gggtctggct cgggaagcac cgcacgcggg
301 gcacggaggt ggccttgaag gagatcgccg tggagcggct tagcagcaag ctccgcgaga
361 gcctcctctc cgaggtcgac atcctccggc gcatccgtca tcccaacgtc atcgccctcc
421 acgagtccat cagggatggt gggaaaatat atcttgtatt agagtactgt cgaggtggtg
481 acttacactc ataccttcag cagcataaaa gggtttctga aacagttgct aagcatttca
541 tccagcagct agcatctggt ctgcagatgc tgcgtgaaaa caacgtggtt catcgagatc
601 taaaaccaca gaacattctt ctagttgcaa ataatgaaaa ttccctcttg aagattgcgg
661 actttggatt tgcaaagttt ttagaacctt cttctctggc tgaaacactt tgcggttcac
721 cgctttacat ggctccagaa gtcatgcaag ctcagaagta tgatgcaaag aacaggcaga
781 tttgtggagt gttggtataa ttctatatca acttgttacc ggatctcctc cttttaccgg
841 ggatagtcaa atccagttgc tgagaaatat actcaataca cgagaaatac gatttccatc
901 tgattgcgac ttgagccatg gctgcattga cttatgcaga aagttactgc gaatcaattc
961 agtggaacgc cttaccgttg aagagtttgt gaaccatcca tttctcgctg aacatgcttt
1021 ggagagaacc ttgagccgga caccatcgga cataagagat ggctttccat tcattaatag
1081 cagtcctacg agaccttcaa gccaaagttc tcaggaagat tgtatgcctt ttcctttgga
1141 tgatgagtca actggacagg atgaaggtcc tgtttctgat agtaagagtg caataaaatc
1201 ctatgggttt gccacgagta aaaggcttga taaaacttca ggtcagagtc caacgaaaca
1261 ttcaagtctg gtctctaaat atattagggg aaataattac gcatctagta gtcaacgcct
1321 ggaccatcct aggagaatca aggaaaacaa gggtgatgaa gggcacaacc ctaaaggtgg
1381 ttatccagaa gattccccta tcattgattc attagagttt gtagatcagg aatatgtctt
1441 tgtgcaccca gagggatcct cctcttcgat gaatgactcc cgacagcgca ccatgccatc
1501 aaaacttgac agttcttctc tttcaccacc gaagttatta actgctgtga gtgcaccaag
1561 gccaatacat ggcatggcaa ttaacagaca gcaatctggt ggaactggta gcttggacag
1621 tcactgctct ccagtatctg gtacttcaca aggatctgca gatctcaacg atgctatgga
1681 tcaaccacca tctgattgtc tgaccagggt tagattattg gagcagtatg cgtctaccat
1741 agcagaattg gtgaaagaaa agattaaaga tgccaagcac ttagagggat tctcgattca
1801 gctagttgtt cttgcaacct ggaagcaagc aatttacatc tgcacttctt atgcatcttc
1861 tgccacaaga gagaatcctt cccatgatgt caccgcgaag ggttttggct caaatgctcc
1921 ccatttgctt gcaaactctc aactgttata tgatacatgc atggagatag agagtcagtt
1981 tttggttcaa atggaatatg ctgaagaact tgccaacact ataggacaga cagttgatgc
2041 tacagaaatg ccagatgcga tagaaatcat atttcagacc gcgcttaacc tgggaagaca
2101 tggtggtgtt gatgagatga tggggaaatc agcatctgcc atggtgctgt actcgaaggc
2161 agtatccatg ctgcgctttc tcctgactga ggcaccgtca ctcgccctga accccgctct
2221 gtccctaaca agagatgatc gacgccgcct gcgcacatac attgaagccg ttaacgctag
2281 gctcgtcccg ttgcaatacc agcggcactg accgctcacc tgtacaatat tctttcatcc
2341 tgtacatata ttcgttggcc caaacgaggg cgtgtaagat atgtcatgtc tgagaacgtg
2401 ctccgattag ggagaagtag cgaaaaatcc agtgtaactt gccc
//