LOCUS AK101480 2178 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033041C01, full insert
sequence.
ACCESSION AK101480
VERSION AK101480.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2178)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2178
/clone="J033041C01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2178
/db_xref="Osa1:LOC_Os04g50950"
/db_xref="RAP-DB:Os04g0597800"
/note="(RAP Annotation release2) TGF-beta receptor, type
I/II extracellular region family protein"
/note="(Rice Genome Annotation Project) peptide
transporter PTR2, putative, expressed"
/note="mapping to R04-TIGRv4S1-000955F (Chr.4: short
arm=29942364, long arm=29946350, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 397 a 648 c 677 g 456 t
ORIGIN
1 gggggttggt gagttggtct gttggtggcc ggggcgcggg cgcgcttacc tgttctccct
61 cgcgtggagc tctttgacta cgcccgccag ctgcgcgtgt gtataacctt gcttgcttgc
121 ctctcacagc cgaagtcgca ggcgcagtca ggagctatcg ggaaaacggg atttccccca
181 gctttccaag gttcgcgggt caatctcgca gtgatactcc ggcggcggca atggacgccg
241 gcgaaatcat cgtggcccag ccatcgccgc ggctgtataa gagtttgact ttccggagga
301 tcgcgacgaa ggaaaggacc attccccagg atgaagagat gaagattcgc agcccgaggt
361 tccaggacga aagcctcact gcgccattta tactagacaa gaaagcgagg agcaaagcgc
421 caacagtggt cctaggattc gagtgcttgg agagcacagc atttaacggc attgccacga
481 acctggtggt gtacctggag actctcctgc acggcagcaa tctcgcgagc gcgtccaatg
541 tcacgacgtg gttcgggacg agctacctca ccccggtgtt cggcgccatc atcgccgaca
601 cgttctgggg caactacaac accatcctcg tctccctcgt cttctatctc cttggtatga
661 tgctggtcac cttctcggcg ttcctgccga ccaccgcgct gtgcaccgtg gtgggctcgt
721 cgtgccagca gccacttctt ggcgcgcaga ccatcgcctt cctcgggctc tacctcgtgg
781 cgttcggaag cggcggtgtg cgcgcggcgc tgctgccgtt cggcgcggac cagttcgacg
841 atgacaacac ggccgaccgc gagcgcaaga tgtccttctt cagctggttc tacatctgcg
901 tcgacttcgg gatgatcgtg tcgggccttt tcatcgtgtg gatccagcag aacgttagct
961 ggggacttgg cttcggcatc gccacggcct gcatcgcgct cgccttcggc ggcctcgtgc
1021 tcgccacgcc catgtacaag cgccgcatgc ccacaggcac gccgatcaag agcctcgcgc
1081 aggtcgtggt tgccgcgtgc cggaaggcaa gactccgtgt ccccgcggac actactcttc
1141 tctacgaagt ccatgacaag atcaaccagt cgaagatagc gcacaccgac cagttcggct
1201 ttcttgacaa ggccgcggtg gtcatggagt ccgacttgga agaggaatcg aacgacgtcg
1261 cggcggatgc ctcgtggagg atctgcacgg tgacgcaggt cgaggagctc aagatcctgc
1321 tgcggctatt gccgatatgg gcgacgagta tcgtgctttc ggcggcgtac gcgcagctga
1381 acacgacgtt cgtgcagcag ggcgccgcga tgaacatgcg gatcatgtcg ttcaccatcc
1441 cgcccgcgtc gatggtgtcc ttcgaggtgc tctgcgtcct ggcatgggtt ctcatgtaca
1501 gctccgtgat cgtgcccatg ctcaacagct tatccctggc caacggcgag ccgtcgcagc
1561 tgcagcggat gggcgcgggg cggctgctca tggcgttcgc gatggccgtc gcggcgctgg
1621 tggagatgat gcggctggac gcggcggggc gcggcgagtc cctgagcatc gcgtggcaga
1681 tgccgcagta cttcgcgctg gccggcgcgg aggtgttctg ctacatcgcg cagctggagt
1741 tcttctacag cgaggcgccg gagtccatga agagcatgtg cacgtccctg gcgctgctca
1801 ccgtggcgct gggaagctac atgagctcat tcatctacgc cgtcgtgaac gcgttcaccg
1861 ccgtggacgg gcggcccggg tggatatcgg acaacctcaa cgaaggacac atggactact
1921 tcttctgggt catggcggcg ctgtgcacgc tcaacttcgt cgtgtacagc gcgttcgccc
1981 ggacctacag ggtgaagctg gtcgtgtcgt gattgttcgt tactccctta ccatgatcag
2041 gttacacgca atcgtggtcg tattgtgtta cagaagaatc ttgtactcct agctagcaat
2101 agcgacagcc gacagtatgt gtaaagttca aggaaaaaaa acaaggtttg atgggctgac
2161 agcccagcag cttccttt
//