LOCUS AK101437 3813 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033039C05, full insert
sequence.
ACCESSION AK101437
VERSION AK101437.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3813)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3813
/clone="J033039C05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3813
/db_xref="Osa1:LOC_Os03g54770"
/note="(Rice Genome Annotation Project) cleavage
stimulation factor, 50 kDa subunit, putative, expressed"
/note="mapping to R03-TIGRv4S1-001485F (Chr.3: short
arm=31073394, long arm=31078610, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 1025 a 885 c 821 g 1082 t
ORIGIN
1 gggtcagtcc agtagcggtt cgtcagtcca gaccagttcc tagctccgaa cagagtcctt
61 ctccgaagtg cgaactcgct gcaagccgaa tccgccgcgc cgccacacgg agacgagagg
121 gagaggtcga gagggagagg gcgagggcga gatggacgcg gcggtgcagg aggcgaagct
181 gctgcgccag gtgaacgccc tcatcgtggc gcacctccgc gaccacaacc tcacgcaggc
241 tgccgccgcc gtcgccgccg ccaccatgac gcccctcgcc ccgcccgagc ccgacggcga
301 cgactccgtc cccgccaacc agctcctccg cctcgtcgcc aagggcctcg cggtggagcg
361 ggaggagacg gggaggggag gaggggcgtt cgactctgcc gccgccgccg ctggatacgg
421 tggattgttg ccgccgctcg gcaccaatgc cgtggatttc agcacgcagg atgttaaggg
481 ctcatccaag agcttcccca agcacgaggc caggcacgta tctgatcaca agaatgttgt
541 ccgatgtgca aaatttagtc ctgatgggaa atattttgca tccgggagtg gtgacacatc
601 aattaagttc ttcgaggttg ctaaaataaa gcagatgatg ctaggggatt ccaaagatgg
661 ccctgtccgt cctgtgatcc gtacttttta cgatcacacg cagcccatca atgatcttga
721 ttttcatcct gagagcccca tactgatatc tgcagcaaaa gacaatacaa taaggttctt
781 cgacttctca aaaactgttg caaggaaagc attcagagtt attcaggaca ctcacaatgt
841 tagatccgta tgttttcatc cttgtgggga ttacctttta gcaggtagta ctattatcct
901 ttcaccatat ggattttacc tgtaaacttg ctctgttgct ctggttatga ggttgtggta
961 ttaatttggt taatacgaac ttttcttagc ctttcttttt ttggaccaaa gataaatcag
1021 atgatcgatc cagctttact gaaaagccaa cagagtctta cagcagaaga caaaagatag
1081 caggtggatt ttccagctta caagcatgaa cactgagcca aaactaccca catctagact
1141 gaagaactac ataaacacat caccactcct ttcagtttag ttgaaactcc accagctaga
1201 tcagacagct atcaaacatc acatctgctg cacaatcata tgtcttcagg caaaatgtcc
1261 ctaggcttca attcattgag ttttgccatg atactactgc accacttgtc cacccgctcg
1321 tgatcattgt ccttttgaag ccttttccaa cactaaaaaa gaaaataaga taaacttata
1381 accccacatg cagtggagat ttaactcgta tcccttcaaa aacatagttg tttctggtca
1441 tccacaaaga ccaacaaacc ccttcaagca agacaattct atttatctgt ttagcactac
1501 atctgttttt gttaaggata tcctctatgg tgcgaagcaa gacatttagc ttacatacat
1561 ccctcacagc attccaaaca taagttctaa aggacaatca aacagaatgt gattagtagt
1621 ttctcttttc ttacacagtt tgcaaaagtt ttagtcagtt tctctgatac cagatgttat
1681 gtggtaggat gaattggggt gctcgacggg aaggcgaggc tgctgcagcc ttgccgcccc
1741 ggagcctagg tgaggccgaa cagagaagag tggagactag agataggttt aacttctttc
1801 ttgattaatt ccaaatgact acggtgcctc tccttatata gagccagctc ctaacaaaca
1861 tcctaacaac cttatctaat agagcctaac aaccttatct tataatgaga ggggctgagt
1921 tctgcccata acatgtgctc attttcgtcc ttctgccatg tggtgtccca tgtggacttg
1981 tagggtcagc accttctttc caatttagac tatgcaagtg actgaaatgc gtgctttgca
2041 tcacccgaaa aaacaaataa tgaactgcat agggtcatct tacatcgata gtaataaaaa
2101 ttagggcaat gcagttactt tatatagttt gttgcatttg agggccctgg atattgtcta
2161 cccgaaccct ggatattacc tgcctgagac catctgtgat gtcataagag gcattaccac
2221 taaagccttt cttttgtcaa attttatttt gtgctgatga acccatagta cctacatttg
2281 aagttggttt catatcatac ctttttattg tatttgatgt gattgtgaag tatataactg
2341 gtcaatgtgc tttttggtat tatctggcaa actcttttaa tttattgttg agttttagct
2401 tgcgtactca ttagtactaa gcatgtctag attgctaaaa acttcttatg cagtggtttc
2461 ttgttttcta atgaaaatga ggaaccaggg tctaggtcct tcattctaaa aactcttaat
2521 ttatttgact aaaacttttt ggagttctag actgaggatt tcgattttgt tgtggaatca
2581 ggcattcttt gcttctttca tttgatgtaa tccacccccc cccccaagtg aagacgctca
2641 tatgaatatt gctaacaaac tgataaagat gataacacaa atatgctatc cattagctgt
2701 tttgatcatg caattgatta agataatttg gacagtgcca tcctgacctg acaagcaggc
2761 tgctgcccct tagtgcgcac gagctgctcc cgatgcacct tctgtgcaca gacttatgat
2821 tccacctgat tccttgcaaa acagagagct cagcacgtgc tattggtggc ccagtcagcc
2881 agtctgaact accaagcacc tgtattatat gcttgatatt tgacaaatat cacaagtcta
2941 gtttctaccg ttttctctgc attcctgctg gaagctaata ctaacacatt aatattcaag
3001 caagtgattc tgatataaac ttttgtaggg actgatcacc cagtggctca tctatatgat
3061 attaacactt tcacatgcta cttatcggca aattcacatg attccaatgc tgccattaat
3121 cagtcactga tgttgatgct aggtccgata ctcttctact gggagcctgt atgtgactgc
3181 ttccaaggat ggttctctgc gcatctggga tgggatatcc gctgaatgtg tccggcccat
3241 aattggagca catgcatctg cagaggttac tagtgcaatt ttcacaaaag atgagaggta
3301 tgtcctatca tgtgggaagg attcttgtat aaaattatgg gaagttggct ctggacgact
3361 tgtcaagcaa tatgtaggcg ctgttcacag acaatttcga tgtcaggctg tcttcaacca
3421 aacggaggaa tttgtagtat caaccgatga acaaaacagt gaggttgtcg tctgggatgc
3481 acttaccgct gaaaatgtag caaggttgcc ctctggccac accggtgccc cgaggtggct
3541 tggccactcc cctgcagaac cagcctttgt tacatgcggt aacgatagat ccgtcagatt
3601 ctggaaacaa accgtgtaga aaatgtagat ccaccaacga atcaacccag aagttggtgg
3661 tagaattaac taatacattg agattaaaaa accttgttca tgtgctgttc cttaattatt
3721 tgattagttg tacacttgta catgctactg aagttgtaca ctgatgatac tgtacccaac
3781 ttggtaggaa aattttggct cttgttggca tcc
//