LOCUS AK101427 1961 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033038G01, full insert
sequence.
ACCESSION AK101427
VERSION AK101427.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1961)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1961
/clone="J033038G01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1961
/db_xref="Osa1:LOC_Os01g40870"
/db_xref="RAP-DB:Os01g0591300"
/note="(RAP Annotation release2) Similar to Cytosolic
aldehyde dehydrogenase RF2D"
/note="(Rice Genome Annotation Project) aldehyde
dehydrogenase, mitochondrial precursor, putative,
expressed"
/note="mapping to R01-TIGRv4S1-000945F (Chr.1: short
arm=23440494, long arm=23446552, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 446 a 516 c 595 g 404 t
ORIGIN
1 ggtccaagag atctactgtt ctccttgttg agaggaagcc atccagccag ctagctataa
61 gatagataga agaagatcaa gacgacgacc aagtagagga taggcatctc tcgaagctta
121 gagacaaata attaactaga gatcaagagc ctattcgtcg tccatgggga gcaccggcga
181 ctgcggcaat ggaaaggcgg ccgccggcgg cggcgggttg gtggtgccgg agatcaagtt
241 caccaagctc ttcatcaacg gcgagttcgt cgacgccgcc tcgggcaaga cattcaagac
301 aagggaccca cgaacaggcg atgtcctggc ccacatcgca gaggcagaca aggctgatgt
361 ggacctcgcc gtcaaggccg cgagagaggc cttcgagcac ggcaagtggc cccgcatgtc
421 aggctatgag aggagcaggg tgatgaacaa gctggccgac ctggtggagc agcacgccga
481 cgagctggcg gcgctggacg gcgccgacgc cgggaagctg ctgacgctgg gcaagatcat
541 cgacattccc gccgcggcgc agatgatgcg gtactacgcc ggcgcggccg acaagatcca
601 cggcgagtcc cttcgggtgg ccggcaagta ccaggggtac accctcaggg agcccatcgg
661 cgtcgtcggc gtcatcatcc cctggaactt ccccaccatg atgttcttcc tcaaggtcag
721 ccccgccctc gccgccggct gcaccatcgt cgtcaagccc gccgagcaga cgcccctctc
781 cgctctgtac tacgctcacc tcgccaagct ggctggagtt ccggatggag tgatcaacgt
841 cgtcccggga ttcgggccga cagccggtgc ggcactctcc tcccacatgg acgtcgacag
901 tgttgctttc actggctctg ctgaaatcgg ccgtgccatc atggagtcgg cggcgcggag
961 caacctgaag aatgtgtctc ttgagctcgg cggcaagtct ccgatgatag tcttcgacga
1021 cgccgatgtc gacatggctg tcagtctgtc atcccttgca gttttcttca acaagggaga
1081 gatttgcgtg gccgggtcac gcgtctatgt ccaagaaggg atctacgatg agtttgtgag
1141 gaaggccgtg gaggctgcca agaactggaa agttggagac ccttttgatg ctgccaccaa
1201 tatgggtcct caggttgaca aggtccaatt tgagagggtt ctcaagtaca ttgagatcgg
1261 caagaacgag ggagcaaccc tactcacagg tggcaaaccc actggtgaca aaggatacta
1321 cattgagcct accatatttg tggatgtcaa ggaggaaatg acgattgcgc aagaggagat
1381 cttcggcccg gtgatgtccc tcatgaagtt caagacggtg gaggaggcga tagagaaggc
1441 caactgcacc aagtacgggc tggctgccgg cattgtgacc aagaacctca acattgccaa
1501 catggtgtcg aggtcagtgc gggccggcac ggtgtgggtg aactgctact tcgccttcga
1561 ccccgacgcg ccgttcggcg ggtacaagat gagcgggttc ggccgggacc aagggatggt
1621 cgccatggac aagtacctgc aggtcaagac cgtcatcacc gccgtcccgg actcgccctg
1681 gtactgataa atcaaatcaa gcagcagcta tagctagagt gtaccatgta ccatgaatgc
1741 tgcagcctgt gtagtgtttt cggatgtttt tctccttaat tctgctgctg cttggtgtgg
1801 ttgtatgtag tttggttgtg gggtgagata tggtgcagat taaaaggggt tctgatgatc
1861 atgatctgat ccttgtttgg ttgaacttgt tgagaaatgg atgtatagaa ctcatgtgcc
1921 atcgtttgaa atcgtacaaa atgtgcctca aagttcaaag c
//