LOCUS AK101419 2289 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033038A11, full insert
sequence.
ACCESSION AK101419
VERSION AK101419.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2289)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2289
/clone="J033038A11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2289
/db_xref="Osa1:LOC_Os04g39430"
/note="(Rice Genome Annotation Project) cytochrome P450
724B1, putative, expressed"
/note="mapping to R04-TIGRv4S1-000607R (Chr.4: short
arm=23248088, long arm=23252490, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 626 a 481 c 617 g 565 t
ORIGIN
1 gagaaaaata gagggaggga gagggagaga agcagagtgt tgagcacaag ctagtgaaag
61 ggttagatag aaacttggta gaatagacag ataggcagag agagagagag agcttagcaa
121 gctaaggctt agctgctgca aggctccatc catgcttctt gttgtgagat gagattgaga
181 taagatgagc agggggtggt ggtgcctggt gtgaggctat aggtaagatg gtgggaggag
241 agcttgtgct ggctgctctg gtgatcctgc ttgctttgct gctgaccctg gtgctgagcc
301 acttcctgcc tttgctcctg aatcccaagg ctcccaaggg aagctttggg tggcctctcc
361 ttggtgagac gctgaggttc ctcagtcctc atgctagcaa caccctgggc agcttcctgg
421 aggatcactg ctccaggtat gggagggtgt ttaagtccca tctgttctgc acccccacca
481 tagtgtcctg tgaccaggag ctgaaccact tcatccttca gaatgaggag aggctgtttc
541 agtgcagcta ccccaggcca attcatggca ttctgggcaa gtcctccatg ttagtggtcc
601 taggggagga ccacaagagg ctcaggaacc ttgctctagc actggtcacc tccacaaagc
661 tcaagcccag ctaccttggc gacattgaga agattgcact gcatatagtt gggtcatggc
721 atggcaagag caaggacaag gggatggtca atgtcatcgc cttctgcgag gaggcaagaa
781 agtttgcatt cagtgtaata gtgaagcagg tgctggggct atcaccagag gagccggtca
841 ctgccatgat acttgaagat ttcctcgcct tcatgaaggg tctcatctct ttccctctct
901 acatcccagg gacgccctat gccaaagctg tgcaggccag agcgaggata tcaagcactg
961 tgaagggtat tattgaggag aggaggaatg ctggctccag caacaagggt gatttccttg
1021 atgtgctgct ttcaagcaat aagctctctg atgaggagaa agtgagcttt gtgctggatt
1081 ccttactggg aggatatgag accacctcac tcttgatctc catggttgtg tatttccttg
1141 ggcagtcagc tcaagatctg gaactagtga agagggagca tgaaggcata agatcgaaga
1201 aagagaagga cgagttcttg agctctgaag actataagaa gatggaatat acccaacatg
1261 taagatgatc gttcaataca tgctttagga ttagttagta agccaggggt accttttttt
1321 cctattatca gcaactacac aaatatgtga ccctccgaat atgaggttta ctcatattca
1381 gaacgattct cctatgccta cccatatatg caatttttga attaagcaaa aaaaagaaaa
1441 agaaacagag agagaaagaa tctcattaca atagagtgaa aagggcggaa gggacatgtt
1501 cttcaataat ggaaactgta tgatgatgca tatgctatgc ccttacaggt tatcaatgag
1561 gcactgagat gtggcaacat tgtcaagttt gtccacagga aggctctcag agatgtcaga
1621 tacaaagagt atctgattcc ttctggttgg aaggtcctac ctgttttcag tgctgttcat
1681 ttgaacccct tacttcatgg aaatgcccaa caatttcagc cctgcagatg ggagggtgca
1741 agccaaggga caagcaagaa gtttacgccg ttcggcggtg gcccccggct ctgccctgga
1801 tcagagcttg caaaagtaga ggctgctttc ttcctccatc accttgtgct caattataga
1861 tggagaatcg atggcgatga cattccgatg gcatacccgt acgtggagtt ccagagaggt
1921 ctgcccatag aaatcgagcc actttgctct gaatcctgac aggtttgcag ttgcagccac
1981 ggtgagcgag ttcatcaaat catccccgca agcgaggggg agatgcgggc gagaacgacg
2041 gactgagagg attagtcagt gaaacaaaaa aaaggagaga aaatatttca agaactgaag
2101 aatgcactga gcattagcta gtagtaccta tcaatgagcc aagctgagat tgtaatttgc
2161 tgtacatggt gtagatatat tttgtccatg ccgattgctt gcggtggtgg tggtgcggtg
2221 cttcaccctg taacatcctc cactgtttca actttcatct gctattctat agaagaaaaa
2281 aaaaaaaag
//