LOCUS AK101334 2131 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033034I03, full insert
sequence.
ACCESSION AK101334
VERSION AK101334.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2131)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2131
/clone="J033034I03"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 90..1895
/db_xref="Osa1:LOC_Os06g02380"
/db_xref="RAP-DB:Os06g0114000"
/note="(RAP Annotation release2) Similar to 60 kDa
chaperonin (Protein Cpn60) (groEL protein) (63 kDa stress
protein) (GSP63)"
/note="(Rice Genome Annotation Project) ruBisCO large
subunit-binding protein subunit beta, chloroplast,
putative, expressed"
/note="mapping to R06-TIGRv4S1-000041R (Chr.6: short
arm=810046, long arm=815535, direction=reverse) for TIGR
Pseudomol ver4"
/protein_id="BAG95015.1"
/translation="MASTFGATSTVGLMAAPTGIVSDKKPSSLSSVSSVSVASRPRNA
RLQRKCNFRVKAAKELYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGS
PRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGV
KVVAAGANPVQITRGIEKTAKALVEELKKLSKEVEDSELADVAAVSAGNNYEIGNMIA
EAMSKVGRKGVVTLEEGRSSENNLYVVEGMQFERGYISPYFVTDSEKMSAEYENCKLL
LVDKKITNARDLINVLEEAIRGAYPILIIAEDIEQEALATLVVNKLRGSLKIAAIKAP
GFGERKTQYLDDIAILTGATVIRDEVGLSLDKADKSVLGTAAKVVLNKESTTIVGDGS
TQEEVTKRVAQIKNLIEAAEQEYEKEKLNERIAKLAGGVAVIQVGAQTETELKEKKLR
VEDALNATKAAVEEGIVVGGGCTLLRLAARVDAIKDNLENDEQKVGAEIVRRALSYPL
KLIAKNAGVNGSVVTEKVLSNDNFKFGYNAATGQYEDLMAAGIIDPTKVVRCCLEHAA
SVAKTFLTSDVVVVEIKEPEPAPVTNPMDNSGYGY"
BASE COUNT 588 a 416 c 589 g 538 t
ORIGIN
1 gcccaaaccc ctcctcaccc gcagcgcccc aacccaaccc tccccgaggt cgcagcctta
61 tcctctcctc tcccctccgc gaggaaatca tggcttcaac attcggtgcc acttctacgg
121 ttggcctcat ggctgcgcca accggaattg tatcagacaa gaagccatct tctctatctt
181 cggtgtcatc tgtttctgtt gccagccgac cacgcaatgc acgccttcag aggaagtgca
241 acttcagggt aaaagctgcc aaggagttgt acttcaacaa ggatggctcg gctatcaaga
301 agcttcagac tggagtaaac aagcttgctg accttgttgg agttacactg ggaccaaagg
361 gaaggaatgt tgttttggag agcaagtatg ggtcccctag gattgtcaat gatggtgtta
421 cagttgcaag agaggttgaa ctggaggatc ctgttgaaaa tattggagct aagttggtta
481 ggcaagcagc agcaaagacc aatgatttag ctggagatgg cacaactact tctgttgtgc
541 ttgctcaggg gctgattgct gagggtgtta aggtcgttgc agctggtgcc aatcctgtgc
601 aaattacacg tggtatcgag aaaactgcga aagcactagt tgaagagcta aagaaattgt
661 caaaggaggt tgaagacagt gagcttgcgg atgttgctgc agtcagtgct ggcaacaatt
721 atgaaatcgg taatatgata gcagaggcta tgagcaaggt tggcaggaag ggtgtggtta
781 cccttgaaga agggagaagt tctgagaata atctctatgt tgtggaggga atgcagtttg
841 aacgtggtta tatctccccg tattttgtaa ctgacagcga gaagatgtct gcagaatatg
901 agaactgcaa gcttcttttg gtggacaaaa aaatcaccaa cgcaagggat cttatcaatg
961 ttttggagga ggccataaga ggtgcatacc caattctgat aattgctgag gatattgagc
1021 aggaggctct tgctactctt gttgtcaaca agcttagagg gtcattgaaa attgccgcta
1081 tcaaagcccc tggttttggt gagcgcaaga cccagtactt ggatgatatt gccattctaa
1141 ctggagcaac tgtaatcagg gatgaagttg ggctgtcact tgacaaggca gacaaatcag
1201 ttttaggaac ggctgcaaag gtggtcctta acaaagagtc aacaacaatt gttggtgatg
1261 gcagtacaca ggaagaagtg actaagaggg ttgcacaaat aaaaaatctc atcgaggctg
1321 ccgaacaaga atacgagaag gaaaagctca atgagaggat tgcaaagctt gctggtggtg
1381 ttgcagtcat tcaggtggga gcacaaacag agaccgaact aaaagagaag aagttgagag
1441 ttgaggatgc cctaaatgct accaaggctg ctgttgagga aggtattgtt gttggtggag
1501 ggtgcactct tctgagactg gcagctagag ttgacgccat caaggacaac ctggagaatg
1561 atgagcagaa ggttggagct gaaattgtaa ggagagcgct gagctacccg cttaaattga
1621 ttgctaagaa tgctggtgtt aatggaagcg ttgttaccga gaaggttctc tctaacgata
1681 acttcaagtt tggttacaat gctgcaactg gacagtacga ggatttgatg gctgctggta
1741 tcattgaccc cactaaggtg gtgagatgtt gtcttgagca tgctgcgtcg gtggccaaga
1801 cattcctcac atcggatgtc gtcgtcgtcg agatcaagga gcctgagcct gcgcccgtca
1861 ccaacccgat ggacaactcc ggctacgggt actgatgact aagttacagt tacttgttct
1921 ccgggaaggt cactggccgt caatttttgg gtagtaggct tgaatctgaa ttttggtgag
1981 atttgagtag tttcgagaca atttgatttg ttcccatggg aagtgaaata aacagggtca
2041 ctatagcaaa atttgtggtg taactggaac ggctgtcaaa ttacgaagga agatatttga
2101 aagatttcat gctctctggg gtttaccgtt g
//