LOCUS AK101332 1555 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033034H21, full insert
sequence.
ACCESSION AK101332
VERSION AK101332.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1555)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1555
/clone="J033034H21"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1555
/db_xref="Osa1:LOC_Os03g27590"
/note="(Rice Genome Annotation Project)
retinoid-inducible serine carboxypeptidase precursor,
putative, expressed"
/note="mapping to R03-TIGRv4S1-000854R (Chr.3: short
arm=15802869, long arm=15807865, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 334 a 482 c 449 g 290 t
ORIGIN
1 ggcttgcact agcatactga gccactacgg ccctcgatat ggacaggccc tatcctcctc
61 ttcttcccct tgctctgctc gccctcctct tcctctgtct cctccacggc gagcgcgccg
121 ccgccgccga cgacgacctc acctccggca ccggcgacgg cagcgagctc tggggatacg
181 tccaagttcg cccgaaggcg cacctgttct ggtggtacta caagagcccg cagcgggcgt
241 cgtcgccggg gaagccatgg ccgaccatcc tctggcttca gggcggcccg ggagcgtcgg
301 gcgtcgggct cggcaacttc ctggaggtcg ggccgctgga cgtcaacctg aagccgcgcg
361 actcgacgtg gctgcagaag gccgacctca tcttcgtgga caacccggtg ggcgtcgggt
421 acagctacgc ggacgacccg agcgcgctgg tgacgacgga ctggcaggcg gccacggacg
481 ccaccgagct gctcagggcg ctcgccgcca aggagatacc caccctgcag agcagcccgc
541 tgttcctcgt cgccgagtcc tacggcggca agtacgccgc cacgctcggc gtctccctcg
601 cccgggccat ccgcgccggc gacctcaagc tcaacctcgg cggcgtggcg ctcggcgaca
661 actggatctc gccggaggat ttcacgctcg cgtacacgcc gctgctgctg gaggtgtcga
721 ggctggacga caacgccggc gacgaggcca gcaagatggc ggcgacggtg aaggagcaga
781 tcacggcggg gcagcttgcg gactcgcagc agtcgtggat cgacctgctg ggtttcatcg
841 acaaaaagag cgccagcgtc gacatgtaca atttcttgct tgactccggc atggacccgg
901 tgtcggcaga cttaccggcg gcgagctcct catcgccgtc gtcaagcagt gctcagttga
961 tgaagtactc aacatacctt agcagccaag cggccgattc aggctccaac acgatcgagg
1021 gcatcatgaa cggtgtcatc aaggaaaagc tcaagatcat ccccaacaac ctcaagtggc
1081 aggaactgtc ggatccggtc tacaatgcgc tggtcaacga tttcatgaag ccaagaatca
1141 acgagatcga tgagctgctg tcttacggta tcaatgtgac ggtctacaat ggtcagcttg
1201 atgtaatatg ctcgacgatc ggtgcagaag catgggtgaa gaagctcaaa tgggatgggc
1261 tgaagaactt cctgagccta ccaaggcagc ctttgaagtg tggctcttcc aagggcacca
1321 aggcgttcgt cagatcatac aagaacctgc atttctactg gatacttggg gctggacact
1381 ttgtacctgc tgatcagccc tgcattgcac tgagcatgat cagtagcata acccagtctc
1441 cagccagtta gatatctccc atcagtaaca gatatactca agaaaagata gaaaacagaa
1501 ggcaaacaga tatacctcac tctcaattag cagagtgaca ttgtaccgtt tcttc
//