LOCUS AK101274 3056 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033033B07, full insert
sequence.
ACCESSION AK101274
VERSION AK101274.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3056)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3056
/clone="J033033B07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3056
/db_xref="Osa1:LOC_Os01g55350"
/db_xref="RAP-DB:Os01g0758300"
/note="(RAP Annotation release2) Similar to
Phosphoenolpyruvate carboxylase, housekeeping isozyme (EC
4.1.1.31) (PEPCase)"
/note="(Rice Genome Annotation Project)
phosphoenolpyruvate carboxylase, housekeeping isozyme,
putative, expressed"
/note="mapping to R01-TIGRv4S1-001359R (Chr.1: short
arm=32186180, long arm=32191880, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 837 a 632 c 776 g 811 t
ORIGIN
1 ggcattggcc gttcggatcg cggtggcgct tcgtgaaggt gggggagaag ggggaaaagg
61 agtcggcttt cggggagatg gcgcgcaatg cggcggacaa ggggacgtcc atcgacgcgc
121 agctgcggat cctggcgcct aagaagctct cggaggacga caagcttgtg gagtacgacg
181 cgctgctcct cgatcgcttc ctcgacatcc tccaggatct gcatggggag gacatcaggg
241 agacggttca agaatgctat gaattagctg ctgagtatga aagtaagatt gcgtatcgta
301 ggaggataaa actgaagaag ggtgattttg ctgatgaaaa ctctgctaca actgaatcaa
361 actttgagga gaccctaaaa aggcttgttg gtgagcttaa gaagtcccct catgaggtat
421 ttgatgctct caagaatcaa acaatcgacc tggtcctgac agcacatcca actcagtcag
481 tcaggaggtc gctgctacaa aagcatggca ggataagaag ttgtttaaca aaactttatg
541 caaaagacat aactccagat gagaagcagg aactcgatga agcacttaag agagagatcc
601 aagccgcctt tagaacagat gaaattcggc gagcacctcc tacaccacag gatgaaatgc
661 gtgctggaat gagttatttt catgagacaa tatggaaggg tgtacccaag tttttacgta
721 gggttgatac tgcccttaag aacattggca taaacgagcg agtgccctat aatgctcctc
781 ttattcaatt ttcttcttgg atgggtggag accgtgatgg aaatccaaga gtcacaccag
841 aggttacaag ggacgtatgc ctgttagcta gaatgatggc tgctaactta tactatgcac
901 agatagagga tctgatgttt gagctatcta tgtggcgctg tagtgatgaa ctacgtgtaa
961 aagctgatca gttacaccgt tgcgcaaaga aaaacacaac aaagcactat atagagttct
1021 ggaaacaagt tcctccgagt gaaccctatc gtgtaatact gagcaatgtc agagataagt
1081 tgtacaatac acgcgagcga gcacgccatt tattagccag tggattttct gaaattcctg
1141 acgaagcaac attcactgat gttgagcagt tcttggagcc tcttgagctc tgttacaggt
1201 ctctctgtgc ctgtggtgat aattctattg cagatggcag tcttcttgac tttctacggc
1261 aagtgtccac atttggacta tcccttgtta gacttgatat taggcaagaa tctgaccgac
1321 atactgatgt tatggatgcc ataactcaat accttggaat tggatcctat cgtgaatggt
1381 cagaggagaa acgccaagaa tggcttctgt cagaactcaa tggaaagagg ccattatttg
1441 gtcctgacct tccccagacg gatgaaattg ctgatgccct agatactttt catgtgatag
1501 cagaactacc ctatgatagc tttggtgcat atgtaatatc catggcaaca gctccttcag
1561 atgttctagc agttgagctt ctgcaacgtg aatgtcatgt gaagaagcca ctgagagttg
1621 tgccattgtt tgaaaaacta gcagatctgg aagcagcacc agcagctctt gcccgacttt
1681 tctctgttga ctggtacaga aataggatcg acggaaagca ggaagtaatg attgggtatt
1741 cagattctgg aaaagatgct ggccgtttct ctgcagcttg ggaactgtat aaagctcaag
1801 aggagcttat taaagttgct aagcagtttg gggttaagtt gactatgttt catgggcgag
1861 gtggaactgt tggaagaggt gggggtccta cacaccttgc tatactgtca caacctccag
1921 ataccattca tggatcactt cgtgtgactg ttcaaggtga agtcattgag caatcttttg
1981 gagaggagca tttgtgtttt aggacacttc aacgttttac atctgctact cttgagcatg
2041 gtatgtatcc accaatttca ccaaagccag aatggcgtgc tttgatggat gaaatggccg
2101 ctgttgctac aaaagaatac cggtccattg tcttccaaga ggcacgattt gttgaatatt
2161 tccgccttgc aacaccagag ttggaatatg gtaggatgaa tattggaagt aggccatcaa
2221 aacgaaagcc tagtggaggc attgaatcac ttcgtgcaat tccttggatc tttgcttgga
2281 cacaaactcg attccaccta ccagtgtggc ttggttttgg cgcagcgttc aagcatgtct
2341 tgcagaagga catacgcaat cttcagatcc ttcaggagat gtacaacgaa tggccatttt
2401 tcagggttac aatagacttg gttgagatgg tgtttgctaa gggtgatcct ggtatagcag
2461 ctctgtatga caagttgcta gtttctgagg atttgtggcc atttggtgct cgtcttagag
2521 caaactatga agaaacaaag caacttcttc tacaggttgc tggacacaaa gaccttctgg
2581 agggagatcc ttacttgagg cagagactgc gtatccgtga ttcctacatc acagcgctga
2641 atgtttgcca agcttgcacg ctaaagcgta tcagggaccc tggcttccat gtaagccccc
2701 gagctcacct ctccaaggac ataatggact cagggaagcc agccgctgag cttgtgaagc
2761 tgaacacaac aagcgagtac ggcccaggcc tcgaggacac tctcatcctg accatgaagg
2821 gcatcgctgc tggtatgcag aacactgggt gaagtagaac tggttcgttc tgatggtgtg
2881 ttatggtgtc atgaattagt gtagtttgca cctctatgca atcactattt gcagtttgca
2941 cctctgaact ctatatgtaa ataaggggat gctaagcaac gtataactaa gactggttat
3001 atccatggat attacctgtt tagcatgtta tatatcgaac tcttatgctg ttcacc
//