LOCUS AK101240 1579 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033031O16, full insert
sequence.
ACCESSION AK101240
VERSION AK101240.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1579)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1579
/clone="J033031O16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1579
/db_xref="Osa1:LOC_Os03g11570"
/note="(Rice Genome Annotation Project) 26S proteasome
non-ATPase regulatory subunit 13, putative, expressed"
/note="mapping to R03-TIGRv4S1-000416F (Chr.3: short
arm=5979022, long arm=5982790, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 376 a 405 c 380 g 418 t
ORIGIN
1 ggttttgttg ttcgcctccg ctcgccgcgc ctgcagatcc ccctctcgcc tcctctcctc
61 tcctccccaa accctagcga gcgaccaact cctgggtggg gggatttttc tccatggcgc
121 tgcagttcgt cgagtcgcag cgcgaggcgc ggccggagct cgccgacccg tacgccgacc
181 tcgccgacct ctaccagcgg aagctctggc accagctcac cctcaagctc gaccacttcc
241 tccagctccc tgccgcgcag acgggtgaca ccctcataca gctctacaac aatttcatca
301 ctgatttcga gacgaagatc aatcttctca aacttgcgca tttcgcggtc atcgcttcgc
361 gccagtaccc cgacaaggat gctgctataa gtttcctcga gggggtaatc acaaaattgc
421 gcgagacaaa ggacctgcgc atcaatgaac ccattctcta cgtcaagatg caaatcgctg
481 cgattaacct ggagaaggga aatcagaagg agtgcaagaa acttttggac gaaggaaaat
541 ctactctaga tagcatgact gatgttgatc ccacagttca tgctagcctc tactggatat
601 catctcagtg ccataaggct cgccaagaat ttgctgagtt ctacaagaat gcccttctgt
661 atctggctta cactactgta gagtcactct ctgagtcttt caaactggat ttggcatttg
721 atctctccct tgcagccttg cttggtgata acatctacaa ctttggggaa ttgttagctc
781 gcccgattat caacagtctt attggaacca aggtggagtg ggtctatcat atgttacaag
841 cattcaacac cggcaaccta gctctctacc aagaactatg tagggtccac aatgctgctc
901 tcagtgctca gccagctttg gtgcagaatg aacggaaact gctagagaag atcaacattc
961 tatgtctgat ggagataatc tttagccggg cgtcagaaga cagaactatc ccattaagtg
1021 ttatagccga gcgcactaag ctttctatca gtgatgtgga atatcttctt atgaagagcc
1081 tctcggttca tcttatagag gggataattg atgaggtgga cagcacagtt cacgtgtcat
1141 gggtccagcc tagagtactt ggaattcaac aggtgaaggc gttgcgcgag cggttggacg
1201 cctgggttgg aaaagtgcat accaccctgt tgtccgttga ggcagagacg cctgatcttg
1261 tagctgcata acttatccaa ccttcctttt gctatatggc cttggtcacc aagggtgcgg
1321 tgcgaaaaga gagatgatct ggctgtggtg gctgtagttt tctgggtgat gaaaacatgt
1381 tgccttgaac gtttccctgg caccctattg atcaggacct gtaatttcat ttctctttaa
1441 atcctctgga cgttgaggcc tggagcttga tgcattgatc acggaaaaag cacaagcgga
1501 tcaaaagttt cataccagta gggtgtcatt gtagttcttt tcccagtgtg atttagattg
1561 ttactcagcg ggtattttc
//