LOCUS AK101187 2131 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033030C17, full insert
sequence.
ACCESSION AK101187
VERSION AK101187.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2131)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2131
/clone="J033030C17"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 114..1751
/db_xref="Osa1:LOC_Os03g61130"
/note="(Rice Genome Annotation Project) hydrolase, acting
on ester bonds, putative, expressed"
/note="mapping to R03-TIGRv4S1-001730F (Chr.3: short
arm=34663260, long arm=34666176, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG94946.1"
/translation="MAGGGGRERRGGGRLLVGVLLLTLVVSGHCLESTHHRGLKRRRR
KHEIHSPIKTVVVVVMENRSFDHILGWLSRTRPDIDGLNGTQSNRLNASDPSSPEIFV
TDEAGYVDSDPGHGFEDIREQIFGSADTSAVPAPMSGFAQNARGMGLGMPQNVMSGFK
PESVPVYAALADEFAVFDRWFASVPTSTQPNRLYVHSATSHGLTFNARKDLIHGFPQK
TIFDSLEENGLSFGIYYQNIPATLFYQSLRRLKHLVKFHQYSLKFKLHAKWGKLPNYA
VIEQRYFDCEMFPANDDHPSHDVARGQRFVKEVYETLRASPQWNETALIITYDEHGGF
YDHVPTPVVGVPQPDGIVGPDPYYFKFDRLGVRVPSFLISPWIEKRTVIHEPNGPQDS
SQYEHSSIPATVKKLFNLHSNFLTKRDAWAGTFENYFKIRKTPRTDCPEKLPEVTKSL
QPFGPKEDSSLSEFQVELIQLASQLNGDHVLNTYPDIGRTMTVGEANRYAEDAVARFL
EAGRIALRAGANESALVTMRPALTSRASPSSDLSSEL"
BASE COUNT 488 a 607 c 566 g 470 t
ORIGIN
1 gtaaagaaga ggagaggaga cacgcaaaag caaagcaaac cactcgccga acaccaactc
61 ctcgccgccg ccgccgagga ggaggaggag ggagcgagct tgacgccggc gccatggcgg
121 gcgggggagg tagggagcgg cgcggcgggg ggaggctgct cgtcggggtg ctgctcctga
181 cgctggtggt gtccgggcac tgcctggaga gcacgcacca ccgcgggctg aagcggcggc
241 ggcggaagca cgagatccac tcgccgatca agacggtggt ggtggtggtg atggagaatc
301 ggagcttcga ccacatcctc gggtggctca gccgcacccg ccccgacatc gacgggctca
361 acggcacgca atccaaccgc ctcaacgcct ccgacccttc ctccccggag atcttcgtca
421 ccgacgaggc cggctacgtc gactccgacc ccggccacgg cttcgaggac atccgcgagc
481 agatcttcgg ctccgccgac acctccgccg tgccggcccc catgtccggc ttcgcccaga
541 acgcccgcgg gatgggcctc ggcatgccgc agaacgtcat gagcgggttc aagccggagt
601 ccgtgccggt ctacgccgcc ctcgccgacg agttcgccgt gttcgaccgg tggttcgcct
661 ccgtgcccac ctccacccag cccaatcgcc tctacgtcca ttccgcgacc tcccatggcc
721 tcaccttcaa tgcccgcaag gacctcatcc atggcttccc gcagaagacc atcttcgata
781 gcctcgagga gaacggcttg tcctttggca tctactacca gaacatcccg gccacgctct
841 tctaccagag cctccgccgc ctcaagcacc tcgtcaagtt ccaccagtac agcctcaagt
901 tcaagcttca cgccaagtgg ggaaagctgc cgaattacgc ggtgattgag cagaggtact
961 tcgattgcga gatgttccct gcaaacgatg accacccctc gcacgacgta gcgagggggc
1021 agaggttcgt caaggaggtg tatgagacgc tgcgagcgag tccgcagtgg aacgagactg
1081 ctctgatcat cacctatgat gagcatggtg gattctatga ccatgtgcct acgccggttg
1141 tcggggttcc acagcctgat ggaattgttg gccctgatcc ttactacttc aagtttgatc
1201 ggcttggagt gcgcgtgcct tctttcctta tctcaccatg gatcgagaag cgcactgtga
1261 tccatgaacc aaatgggccg caggactcct cacaatatga gcactcatcc atccctgcaa
1321 cagtaaagaa gctatttaat ttacattcta acttcctgac aaagagggat gcatgggctg
1381 ggacctttga gaactacttc aaaatccgga aaacacccag aactgattgt ccagagaaac
1441 tcccagaggt cacaaagtct ctgcaaccgt ttggccctaa ggaagattca tctctgtcag
1501 agtttcaagt ggagttgatt cagcttgctt ctcagctcaa tggtgaccat gtactcaaca
1561 cctacccaga tattggcagg actatgactg tgggtgaagc aaaccgctat gcagaggatg
1621 ctgttgctag atttttggaa gctggcagga ttgctctaag agctggtgca aatgaatctg
1681 ctttggtcac catgaggcct gcactcacca gcagagcctc accgtcctct gatttatcat
1741 ctgaactctg atggattgtt ctcagattta tccacaattc tgcatcatga tttgcaccgc
1801 gtcagctttt ggttgatgag aactcgtaca atgtgctaag aaaacatagg taggttggtg
1861 tacggcaaag tgtgctagta ttatgtaatt gatagatctt aaacatggct ttgtacatag
1921 acatcatgat acttgatatc tcaagctttt acttcagctg tcctctgata acgctgagat
1981 atcagctcag aagtatctga taagatccta ctctggataa gctggagagg gaatttgtaa
2041 accatcgata ttcagctctg tacctgctta ttcagcagtt gaactgcact tctgatgaaa
2101 tactttatgt acaccagtta tagtggtatt g
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