LOCUS AK101181 2043 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033029F02, full insert
sequence.
ACCESSION AK101181
VERSION AK101181.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2043)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2043
/clone="J033029F02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 27..1634
/db_xref="Osa1:LOC_Os09g38340"
/note="(Rice Genome Annotation Project)
INDETERMINATE-related protein 1, putative, expressed"
/note="mapping to R09-TIGRv4S1-000776R (Chr.9: short
arm=22063972, long arm=22069460, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG94944.1"
/translation="MAAASSAPFFGLGDTQMPPPQNPTNPALHHHPNPSPAPVAAAAP
APKKKRNQPGNPNPDAEVIALSPRTLMATNRFVCEVCNKGFQREQNLQLHRRGHNLPW
KLKQKNPKEARRRVYLCPEPSCVHHDPSRALGDLTGIKKHYCRKHGEKKWRCDKCSKR
YAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQENARMPPIGAGVY
GGAGNMTLGLTGMAAPQLPAGFPDQAGQPSASAGDVLRLGGGSNGASQFDHLMASSSG
SSMFRSQGSSSSSFYLANGAAHHAPAQDFGPEDGQSQAGQGSLLHGKPAAFHDLMQLP
VQHQQSGNGNLLNLGFFSGSNGGVDQFNGGAGNGGQGSIVTSSGLAGNHGGGGGGFPS
LYNSSEPAGTLPQMSATALLQKAAQMGATTSSYNAGGAGGASSLLRGASSHGISVGEG
PANERSSYQNLIMGSMASGGGGAGFAGSFSGASGFGGAVDDGKLSTRDFLGVGVVQGI
SGSAAMGPPRHGAAGLHVGSLDPANMN"
BASE COUNT 401 a 653 c 624 g 365 t
ORIGIN
1 ggatctctcc ctgttgtttt gcggggatgg cggccgcctc gtccgcaccc ttctttgggc
61 tcggcgacac gcagatgccg ccgccgcaga atcccaccaa tccagccctc caccaccacc
121 ccaacccctc ccccgctccc gtcgccgccg ccgcgcccgc gccgaagaag aagaggaacc
181 agcctggaaa cccaaatcca gatgcggagg tgatagcgct gtcgccgcgg acgctgatgg
241 cgaccaacag gttcgtgtgc gaggtgtgca acaaggggtt ccagcgggag cagaacctgc
301 agctgcaccg gcgagggcac aacctgccgt ggaagctgaa gcagaagaac cccaaggagg
361 ctcgccggcg cgtgtacctg tgcccggagc cgtcgtgcgt ccaccacgac ccgtcgcggg
421 ccctcggcga cctcaccggg atcaagaagc actactgccg caagcacggc gagaagaagt
481 ggcgctgcga caagtgctcc aagcgctacg ccgtgcagtc cgactggaag gcccactcca
541 agacctgcgg cacccgcgag taccgctgcg actgcggcac cctcttctcc aggagggaca
601 gcttcatcac ccaccgcgcc ttctgcgacg cgctggcgca ggagaacgcg cgcatgccgc
661 ccatcggcgc cggcgtatac ggcggcgccg gcaacatgac acttgggctc accggcatgg
721 ccgccccgca acttcccgcc ggcttccctg atcaggccgg ccagccgtcg gcgtcggccg
781 gcgatgtcct ccgcctcggc ggcggcagca atggcgcctc tcagtttgat cacctcatgg
841 cctcgtcgtc gggctcctcc atgttccgct cgcagggatc gtcgtcctcc tcgttctacc
901 tcgccaatgg cgccgcccat catgctcccg ctcaggactt cggcccggag gacggccagt
961 ctcaggccgg ccagggctcg ctgctccacg gcaagccggc ggcgttccat gacctgatgc
1021 agctccccgt gcagcaccag caaagcggca atggtaacct cctcaacctt ggcttcttct
1081 caggcagcaa tggcggcgtc gaccagttca acggcggcgc tggaaacggc gggcagggca
1141 gcatcgttac ttctagcggc ctcgccggca accacggcgg cggcggcggc ggcttccctt
1201 ctctgtacaa ctcgtccgaa ccggccggta cactgccgca gatgtcggcg acggcgctct
1261 tgcagaaggc tgcccagatg ggtgcaacga cgagcagcta caacgccggc ggcgccggtg
1321 gcgcgagctc gctgctccgt ggagctagct cccacgggat cagcgtcggt gaagggccgg
1381 ccaacgagag gtcgtcgtac cagaatctca tcatgggctc catggcgagc ggcggcggtg
1441 gcgcgggttt cgccggtagc ttctccggcg cgtctggatt cggtggcgcc gtcgacgacg
1501 gcaagctgag cacgagggac ttcctcggcg tcggcgtcgt ccagggcatc agcggctcgg
1561 cggcaatggg gccgccgcgc catggcgcgg ccggcctcca cgtcggctca ctggacccgg
1621 caaacatgaa ctgaagtcat cacagagaag aaaaaaaaca atagaagacg gaaggagatg
1681 atcatgctgc taatttcatt tcatcatatc agaattagtc aagaaactgg aggtaattaa
1741 ttaagaagag aaaagcgatt tcaatccatg caagatggat gtttctgggg aaatctggag
1801 ctgttaatgg tgagtcgtag ttgctagcta gctagccaga gctgggagga ataataataa
1861 tacctggatt aagtggccag aacttaattt tgtaccggta catttcgttt gtttttcatg
1921 tacttttggc agggaaatgg gtctcttttg atgtgaagtc atcatgtgaa ggcctgaccc
1981 cagactagaa tcaattcaag cgcgcgctgt gcctggatta attaatcttg gagttttatt
2041 gcg
//