LOCUS AK101065 1705 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033023E01, full insert
sequence.
ACCESSION AK101065
VERSION AK101065.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1705)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1705
/clone="J033023E01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1705
/db_xref="Osa1:LOC_Os01g01190"
/db_xref="RAP-DB:Os01g0102000"
/note="(RAP Annotation release2) Phosphoesterase family
protein"
/note="(Rice Genome Annotation Project) hydrolase, acting
on ester bonds, putative, expressed"
/note="mapping to R01-TIGRv4S1-000002R (Chr.1: short
arm=86564, long arm=88267, direction=reverse) for TIGR
Pseudomol ver4"
BASE COUNT 295 a 648 c 462 g 300 t
ORIGIN
1 gttggccgct ctctcctcac cgacggcatc tccagcagca cgggcattcc ggcgccatgg
61 gtcggcggct gttgctgctc ttcctaatgc tggcacaggc acccaattcc aatggggatt
121 ccaagataaa gaacgtggtg gtgttggcgc tggagaaccg gtcgttcgac cacatgctgg
181 ggtggatgca gcggctgctg ggcctcccca tcgatggcct caccggcgca gagtgcaacc
241 cggctccagg accaggtcca gccgactccc tcctccactg cgtctccccc gacgccgacc
301 tcgtcgtccc cgacgacccc gcccacgcct tcgaggacgt cctcgagcag ctgctggggt
361 tccgacccaa tgactctact ggcgccgccg cctccccctc agacatgtcg ggcttcgtcc
421 gcagcgccgt ctccgtgagc gcgctcctga ccgacgccgt catgcggggg ttcaccccgt
481 cgcggctccc ggccttctcc gcgctggcct cctccttcgc ggtgttcgac cgctggttct
541 cctccatccc ggggcccacg cagcccaacc ggctgttcct ctactccgcc acctcccacg
601 gcgccgtcgc ccacggcaag tggaacctcc tccgcggcta cccgcagcgc accatctttg
661 actccctcgc cgccgacgcc ctcgactacc gggtctactt caagaccatc cccaccaccc
721 tcttctaccg ccgcctccgc accgtcgcca acgccgcccg cggcaccttc cgccgctacg
781 acgccgcctt ccgcgaccac gcccgcaggg gcctcctccc ggcgctctcc gtcatcgagc
841 cacgctactt cgacctcacc ggcacgcccg ccgacgacga ccacccggcg cacgacgtcg
901 ccaacggcca gaggctggtc aaggacgtct acgaggcgct gcgggcgggc ccgcagtgga
961 accacacact gctcatcatc acctacgacg agcacggcgg cttctacgac cacgtcccgc
1021 cgcccaatgt cggcgtcccc agccccgacg ccatccgtgg cccgctgccc ttcttcttca
1081 ggttcgaccg cctcggcgtc agggtgccca ccatcatggt gtcgccgtgg atcaggaaag
1141 ggacggtggt ggggaggccg ccgggagggc caacgcccac gtccgagtac gagcactcct
1201 ccatcccggc caccatcaag aagatattca acctcagctc cgacttcctc accaggaggg
1261 atgcgtgggc gggcaccttc gagcacctct tcacggacct ggacgagcca aggacggatt
1321 gcccggagac attgccggag atcccgccgc catcttcctc gtcgtcgtcg accaagaaag
1381 aagacggagg atggctgtcg gacttccagc gcgagctggt gcagctggcg gccttcctca
1441 acggcgacta catgctgtca agcttcgcac aggagtacga gtcgagaatg acgatgacgg
1501 tgaagcaggc ggatgcgtat gtgaggcgag ccgtcaaaag tttcctggag gccagcaagc
1561 gggccaaacg cttaggtgca aacgactccg ccattgtaac catgagacca tccctcacta
1621 ctgcaaccac ctgctgccct tagttaccta ctgtagtaca ctaaactagt ctctttatta
1681 atttaattaa ttacctacct tagct
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