LOCUS AK101029 2112 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023150H24, full insert
sequence.
ACCESSION AK101029
VERSION AK101029.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2112)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2112
/clone="J023150H24"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2112
/db_xref="Osa1:LOC_Os06g01934"
/db_xref="RAP-DB:Os06g0108900"
/note="(RAP Annotation release2) POX domain containing
protein"
/note="(Rice Genome Annotation Project) BEL1-related
homeotic protein 14, putative, expressed"
/note="mapping to R06-TIGRv4S1-000027F (Chr.6: short
arm=522060, long arm=529058, direction=forward) for TIGR
Pseudomol ver4"
BASE COUNT 509 a 587 c 600 g 416 t
ORIGIN
1 gtccatggtt taattatttg tagccttata gagagagaga agagaagaag agagagagat
61 cagtgtgagg caccgacgaa gacgaagacg aagacgacga cgacgacaag cacacaacaa
121 atttgcacac acgcgcgcga gcatcgatga tggcggccca tcatcatcat catgagcacc
181 accacctctt ggacatgtcg tcgcccccaa acgccagcgg cgccatcatc tcctccttcg
241 accacgccgc cggcctcctc tccctccacg acgtcgccgc cgccgccgac caccaccacc
301 accacctacg aggaggagga gggggtttgc aattgccatc gccgtggtcg cagcagcagg
361 tttccctctc cctctacaac aacgctgccg gcgcagcagg ctcgccgccg tcgtcgttgg
421 ttgcccatca gcagctggcg gcggcgcagc cattaatgtt ccagctgagg gggtccaagt
481 acctgggccc tgtgaaggcg ctgctcgccg agttctgcag cctcgacgtt gaggccatgg
541 atggcgccaa gcagcagaga cctcccaatc ccaatcccaa gattggaaag tgggacgacg
601 tggagggttc aggttcgtgg ggcaacctgt ctctgagctc catggacctc ctggatctcg
661 agaggaggaa ggccaggatc ttgtccatgg ttgaagaggt ggacagacgt taccggcgat
721 accgtgagca gatgagggcg gtggaggtgt cgttcgaggc ggtggccggc ggcggcgcgg
781 cgcaggtgta cacgaagctg gcgatgcgag ccatgtcgcg gcacttccgg tgcctgaggg
841 acgcgttggt ggggcaggtg cgcgcgctga ggaacgccat gggggagagc cagagggacg
901 ccgccggcgg cgtggcggcg gcggcgcccg gtgccaccaa gggcgacacg cctcggctgc
961 gggtgctgga ccagtgcctg aggcagcaga gggcgttcca gcagtccggc gccgtcgaca
1021 gcttcccgtg gcgcccgcag cgcggtctgc cggagcacgc cgtcgccgtc ctccgcgcct
1081 ggctcttcga gcacttcctc cacccgtatc caaatgatgt ggacaagcac attttggcgc
1141 gccaaacagg cttgtcaaga agccaggttt cgaattggtt catcaatgca agggtgaggc
1201 tatggaagcc tatgatagaa gacatgtaca aggaagaaac gaagccggaa tcatctgatg
1261 gcaacaacaa attaaaccct agcgcagccg gcaacaaaca gcagcatcga gatgatccca
1321 agaagaatta cacggcaacg acagcagaag ccagcttagt acaacaaagc agctaccatc
1381 tccaccttcg cagcagcgga aaccgtaact cctcctcgtt gatgatccct gcagcagcat
1441 caacatccat cgatcatcac catgacagca gccaccagct gttgggcggc catagctatt
1501 cttcagcagc aggattgcat catggtcatg gcggcgccgt gtcgcttact ctagggctcc
1561 agcagcagca gcagccattt gcggcgtcga tgatgcatca gcatcagcag caccagcacc
1621 agcaccagca gcagcagtca ttcatggtgg aggcggcgga ggaagaagaa gatgacgtgc
1681 tcccttacag gaacctcatg gagtctcagt tgctgcatga ttttgcagga gctagctaag
1741 gcaggctcca gcttagcatg cagctaattt atttgattgt taaaggagat tattgcgctc
1801 aaaagtttaa tttaattaag gagatgtagg taattaaata ttacattatt gttcttttat
1861 gaccaaacat ttcgttacat tatttgggga tttcttttgt aaaaatcagc ccaccacttc
1921 tgttctggcc tagctagctt agcatgcagt gatgtggaac ccacccttgc agtcccatct
1981 gggcccatga caagttagtt acttagagca cccgcaatgg taaagtaagg tgttatctat
2041 aaaacatgta catctcagca atagactaga ttaatagtaa accacttcaa tggtatgtct
2101 acatgggtat ct
//