LOCUS AK100858 2538 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023123M02, full insert
sequence.
ACCESSION AK100858
VERSION AK100858.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2538)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2538
/clone="J023123M02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2538
/db_xref="Osa1:LOC_Os08g29570"
/db_xref="RAP-DB:Os08g0384500"
/note="(RAP Annotation release2) Similar to PDR-like ABC
transporter (PDR3 ABC transporter)"
/note="(Rice Genome Annotation Project) PDR-type ABC
transporter 1, putative, expressed"
/note="mapping to R08-TIGRv4S1-000510R (Chr.8: short
arm=17995712, long arm=17999876, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 593 a 650 c 670 g 625 t
ORIGIN
1 gtgctccttg tgctcagtgg atttatccta tcacaccatg atgtgaaaaa atggtggatc
61 tggggctact ggatctcacc tctccagtat gcgatgaacg ccatcgcagt gaatgagttc
121 cttggacaca agtggaaccg ccttgtccaa gggaccaata caactttagg aattgaagtg
181 ctcaagtcca gggggatgtt cactgaggca aaatggtact ggattggcgt cggtgcactc
241 ttcggatacg tcattgtgtt caacatccta ttcaccatcg ctctaggcta ccttaaacca
301 tcgggaaaag ctcagcaaat tctttcagag gaagcactga aggaaaagca cgccaatatc
361 accggagaaa cgatcaatga tccaagaaac tctgcatctt caggacaaac taccaacaca
421 aggagaaatg ctgcaccagg tgaggcaagc gagaacagga gaggaatggt gctccctttc
481 gcgccgcttg ctgttgcctt caacaacatc agatactctg tcgacatgcc tccggaaatg
541 aaagcacagg gtgtggatca agacaggctg cttctgctga agggagtcag tggcagcttc
601 aggcctgggg tcctcactgc actgatggga gtcagtggtg ctggcaagac aacactgatg
661 gatgtgttgg ccggcaggaa gacgggaggc tacatcgaag gtgacatctc gatctctggc
721 tacccgaaga agcaggaaac cttcgctcgg gtctctggtt actgtgaaca gaatgacatc
781 cactcgccaa atgtgactgt ttatgagtcc ctggcttact ctgcttggct caggctgccc
841 tctgatgttg attcagaaac aagaaagatg tttatagagc aagtgatgga gctggtagag
901 ctgaatccac tgagggatgc gcttgttggg ctacctggag taaatggcct gtcaaccgag
961 caaagaaaga ggctgacgat cgctgttgag ctcgtcgcaa atccttcgat aatattcatg
1021 gatgagccta catctggcct tgatgcaagg gcggcagcaa ttgtcatgag gacggtgagg
1081 aacaccgttg acacaggcag gactgttgtc tgcaccatcc accagcctag cattgacatt
1141 tttgaggcct tcgatgagct gttcctgatg aaaagaggtg gagaggagat atacgtgggt
1201 cctctaggac accattcttg tgaccttatt gaatactttg agggagtcga aggggtcagc
1261 aagatcaaac caggctacaa cccggcaaca tggatgctgg aagtaaccac actggcacag
1321 gaagacgtac tggggatcag ctttacagat gtctacaaga actcagatct ctaccagaga
1381 aaccagagct tgatcaaggg catcagcagg ccaccacagg ggtccaagga cctcttcttc
1441 ccaacacaat tctcccagag cttctccacc cagtgcatgg cctgcctctg gaagcagaac
1501 ctctcctact ggaggaaccc tccctacacc gtcgtccgct tcttcttctc cctcatcgtc
1561 gccctcatgt tcggcaccat tttctggcgc ctcggcagca aaagatcgag gcagcaagac
1621 ctgttcaatg ccatggggtc gatgtacgcg gcggtgctgt tcatggggat ctcctactcg
1681 tcgtcggtgc agccggtcgt cgccgtcgag cggacggtgt tctaccggga gagggccgcc
1741 gggatgtact ctgcattgcc atacgccttc ggacaggtgg tggtggagct gccgtacgtg
1801 ctggtgcagt cggcggtgta cggggtgatc gtgtacgcca tgatcggctt cgagtgggag
1861 gccaagaagt tcttctggta cctctacttc atgtacttca cgctgctcta cttcaccttc
1921 tacggcatgc tcgccgtcgg cctcaccccg agctacaaca tcgcctccat cgtctcctcc
1981 ttcttctacg gcatctggaa cctcttctcc ggcttcgtca tcccccgccc gagcatgccg
2041 gtgtggtgga ggtggtactc gtgggcgtgc ccggtgtcgt ggacgctgta cgggctggtg
2101 gcgtcgcagt tcggcgacct gaaggagccg ctccgcgaca ccggcgtccc cattgacgtc
2161 ttccttaggg agtacttcgg cttcaagcac gacttcctcg gtgtcgtcgc cgttgctgtt
2221 gcggggttcg ccacgctctt cgccgtctcc ttctcgctct ccatcaagat gcttaacttc
2281 cagaggaggt gatgatcgat ttttgctaac tcagacctga tcgattaccc acttccaatg
2341 taacagtttt ttttttcctt tttttcaact ctattttggt tttgtaacaa aattcgtagt
2401 atagtgcagt cagaaatgaa gcaaacagga gtatatatac aaagctgata gtgcagataa
2461 tttgttttac atgcatgaaa tctgttaatt ttgattctat tttgtacatg tagtattaat
2521 tgaaaagaaa tgaaagcc
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