LOCUS AK100814 2506 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023122C04, full insert
sequence.
ACCESSION AK100814
VERSION AK100814.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2506)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2506
/clone="J023122C04"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2506
/db_xref="Osa1:LOC_Os08g38400"
/db_xref="RAP-DB:Os08g0492000"
/note="(RAP Annotation release2) Similar to Glutathione
transporter"
/note="(Rice Genome Annotation Project) oligopeptide
transporter 5, putative, expressed"
/note="mapping to R08-TIGRv4S1-000788F (Chr.8: short
arm=24178300, long arm=24181972, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 444 a 779 c 774 g 509 t
ORIGIN
1 ggggcgagga ccagtaccaa tggagcaacc acggcttgag ctcagcagcc tgggaggtca
61 ccggagtagc gaaaatccag agagcagaga tgagaaaacc gaagaggagg tagacgactg
121 cccgatcgag gaggtgcggc tgacggtgcc gatcaccgac gacccggcat tgccggcgct
181 gacgttcagg acatggctgc tggggctcat ctcctgcgcg atgctggcct tctccaacca
241 gttcttcggc taccggcaga atccgctcta catctcgtcg ctgtccgtgc agatcgtcgt
301 cttgccgctg ggcaagctga tggctgcttg cctccccaag aaggtgttca gggtgaaggg
361 cacggcatgg tcgttctcgc tcaacccggg gccgttcaac ctcaaggagc atgtgctcat
421 caccatcttc gccaacaccg gatccaactc cgtctacgcc gtcggcatta tcaccattgt
481 taaggccttc taccgccggg agattcatcc tcttgctgcc atgctgctca cccagacaac
541 ccagctgatg ggatatggtt gggctggcct cttcagaaag tttcttgtgg actcacctta
601 catgtggtgg ccttcaaact tggtacaggt ttcactcttc agagctctgc atgagaagga
661 gaagaggcca aagggaggga cgacgaggct gcagttcttc ctgaccgtgc tcatcaccag
721 cttcgcctac tacattgtgc cgaactacct gttcccgacc atctccacca tctcggtggt
781 gtgcctggtg tggaagaagt cggtgacggc gcagcagatc ggctccggcg tgtacggcct
841 gggcgtcggc tcgttcggcc tggactgggc gacggtggcc ggcttcctcg gcacgccgct
901 gtcgacgccg gcgttcgcca tcgtcaacat catggccggc ttcttcctca tcgtctacgt
961 gatcgtgccg gcggcgtact gggccgacgc gtacggcgcc aagcggttcc cgatcatctc
1021 ctcccacgtg ttctccgcca acggcagccg gtacgacgtc aaccaggtgc tcgacacggc
1081 gacgttcgag ttcagccagg ccgggtacga cgccgcgggc aagatcaacc tgagcatctt
1141 cttcgccttc acctacggcc tcagcttcgc cacgctcgcc gcgacgctgt cgcacgtcgc
1201 gctcttccac ggcgggtcga tatggcggca gaccaaggcg gcggtgagcg ggcagggcgg
1261 cgacgtgcac accaggctga tgaagcgcaa ctacgccgcg gtgccgcagt ggtggttcca
1321 ggtgatgctc gtcgccgtgc tcggcctctc cgtgttcacc tgcgagggct tcggccagca
1381 gctgcagctc ccgtactggg gcgtcctcct cgccgccggc ctcgccttct tcttcaccct
1441 ccccatcggc atcatcaccg ccaccaccaa tcagcaacct gggctgaacg tgatcaccga
1501 gctgatcatc ggatacctgt acccggggag gccgctcgcc aacgtcgcct tcaagacgta
1561 cggctacatc agcatgtccc aggcgatcat gttcttgcag gatttcaagc tgggccacta
1621 catgaagatc ccaccacgct ccatgttcat cgtccagctc gtcgggacgg tgctggcgtc
1681 gtcggtgtac ttcgggacgt cgtggtggct gctggagagc gtgagcaaca tctgcgaccc
1741 ggcgaagctg ccggagggga gcccgtggac gtgccccggc gacgacgtct tcttcaacgc
1801 ctccatcatc tggggggtgg tcggcccgct gcggatgttc ggccgcctcg gcctgtacgc
1861 caagatgaac tacttcttcc tcgccggcgc gctggcgccg gtgccggtgt gggcgctgtc
1921 gcgggcgttc ccgggcaggg cgtggatcgg gctcgtcaac atgccggtgc tcctcggcgc
1981 cacggggatg atgccgccgg cgaggtcggt gaactacctc atgtggggcg ccgtggggct
2041 cgccttcaac tacgtcgtgt accgccggta caaggggtgg tgggcgcggc acaactacgt
2101 gctgtccgcc gggctggacg ccggcgtggc cttcatgggg atcctctcgt acgccgtgct
2161 gcagtcgagg ggcatcaatg gcgtcaactg gtgggggctg caggtggacg accactgcgc
2221 cctggctcgt tgccccacgg cgcccggggt cagcgccccc ggctgcccgg tgcagtgagc
2281 agagcagacc attggcatca atcagctggg aaaacttagg gcagttagga ttataggtct
2341 atatagctcc tcaagtttat aaatgatcgt tgaccaaaaa tggcattgga aaagatcagc
2401 acacagcact actgtgtaat tgtgcgtaaa acaaaagcgc cgtatgtaac tatgtatgta
2461 gtgatgaata gtctgattat atgtcaaacg catgtgcttg ttctgc
//