LOCUS AK100685 2928 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023113M24, full insert
sequence.
ACCESSION AK100685
VERSION AK100685.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2928)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2928
/clone="J023113M24"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2928
/db_xref="Osa1:LOC_Os02g57270"
/db_xref="RAP-DB:Os02g0817800"
/note="(RAP Annotation release2) Similar to Telomere
binding protein-1"
/note="(Rice Genome Annotation Project) initiator binding
protein, putative, expressed"
/note="mapping to R02-TIGRv4S1-001589R (Chr.2: short
arm=35079796, long arm=35084780, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 777 a 694 c 733 g 724 t
ORIGIN
1 tgggggtttt tctcctccaa tcctttcccc tctccctctc ctcctcctcc tcctccctgc
61 gccttccgct tgcagcgatt cctcctcccc gcccgctctt ctcgaacctt ctggaacctt
121 cccccatccc ccacaagaag cagcagatgg gcatcgtcgt cgtcgtcgtc aaccaatcct
181 aggcgacgag cgctgcggcg gcgcgcgcca tctgctcccc tccgccgtgc tccggtgctc
241 cccgatctgc gcctcccgct ccggttggtc ggctgtcgga acacgcagct gcaaaaccct
301 agccgagctg cggcgatctc aacgctggcg gcgaggccct cctcttcgtc ggcgtcgacg
361 gaaaaatatg gcgcatgttt tatttacttc cccttgctgt cactgaacac atttcctaga
421 gtcaaggaca agacatggtg ttgcagaaga ggttggacta tggatcccat ggccatcgtg
481 ctcccattaa gccacgtgtc gcaacattgg cgccggttaa acgctccaca agaataagga
541 aaaagcagat gtatgcactt gatttgcttg cgacagctgc agaaaaattg ttggctgatc
601 aagacaattt atctagtgga cctaacataa atgaaacacc agaaggttat gttacaagca
661 tgaaaccagt taaagcagaa cagtttgatg aagcgtttcc gttgagaagc gtggctgtga
721 aaaaagatga ctgcaaaggt tgtacagtag gctgtgcagg catctgtggc tttctcagac
781 aagctaatat gtgcttggct gaaaactcgt cgactcaaaa tctagctgat tcagtactag
841 agtcactaac agcaaagcct gatgtgttgg ctaaggactc atttgttagc agtaaaaaat
901 catgtcgatt gggttttggt cttggcacaa ttccggagta tggatctgtt ggagtatgcc
961 aaccttggtc cacaagatca gcagaggtta aacaagtgca tcgggcgaga ccaacagcaa
1021 tcagaagtca agaagatagt gatgctgcag ctctatgtgc tttggtcgag accatggatt
1081 tggacaccaa acctcttgct gaggctagct ctggtagtaa ctcaggagtg cacatctgcg
1141 gccctgacag ggggcataac tcccatccct cgtgtttggc taaagtgcag catgctgcag
1201 acagagatga tgacgaaaat tcttctgggt gtgtacatcc aagcacctca ggaaataacc
1261 gtggttatat tccacattat ataggtgacc gcaggataag gagattgttt gcctccaggt
1321 taaggaaggc agctcgcaac aggatatgtg gagagatgtc ttgtaaaggt aacaagctga
1381 gtttgtgtga aaagaagatg cccactacgc gccgaagagt gcaacaaaca actttgaaga
1441 ggaaaagact tgctcaactt tactccgaaa aatcatctga tgaagaaaac tgtgtcagat
1501 gctgttacta ctataattga acgcggtctc cgtgtcggta tacttcttca aggaaaaaat
1561 attcaaaatg acaacaagac gcttcgtcag gctgggattt gccgtggtaa aaaactaaat
1621 gacataggct ttactctgga atgtgaagct gggcaagatt ctcaccctgg tgtaatagtg
1681 ccagaagaaa tggattttgt tggtgcatct gttgtggaca agtctgctac ggtgaaatgc
1741 gaagaacctg ctgagaacca gcagcttatg caagattttc caggctgcag cttgagtgat
1801 cctggttctg ttgattatcc cgtggaatgg agcacacaag aaacatcagc aagctcccaa
1861 gccatcgtcc cttttgcaga tccaaactca ctggcgctgg ccaatgtgcc gctttctagg
1921 tcaaagcgac cagattttgg gcaaagacgg ataaggaggc ctttcactgt tgctgaagtg
1981 gagttgctgg tggaagccgt cgagcacctt ggaacaggaa ggtggaggga cgtcaaattc
2041 cgcgcatttg aaaatgttca tcataggacc tatgttgatc tgaaggacaa gtggaagacc
2101 ctggtgcaca cggcgagcat agcgccgcag caaagaaggg gagctccagt tccacaggaa
2161 ctcctggacc gtgtgctcgc cgcacaggcc tactggtcgg agcagcaggc aaagctccat
2221 ggcgatcccc ctgttcctga aatctgccct acctgatcct gatgatgatt gatggagaag
2281 gcaagaatgg ccctcgtgta caaatcggtg taaaaattgt tcagaaggga ttggttggtt
2341 gacgtttgat tgaaatttgt cgacagttga aaactcacaa cttggtcctt cctactgttg
2401 gttcgttaac aggaggagga agaagaagaa gaagaagaag aagaagctta tttgtaaatt
2461 tcagcagagt ttactgtctt tgcaaaaatg caagtcgttt tggacaagtt gagctggttt
2521 ttgcatttgc ttggacgtga tcctggctgg gccgttgtga tgatgaggtg aggcccaagc
2581 ccatgaaaca agatgggctt tgtcatcgtg ggaagcagac cttggctgtt acggctgctg
2641 ttgtctttat ctaccggcct ggccttctta tccaactgca actaacacca accggccagc
2701 tgccgtcagg cctgacgtca gcacaagcat ggaagcagac gaactccacg tttagctcca
2761 tcagaccatc accattcggc gcggattctc gattagcatg tgcactcgta tcatcacaat
2821 tagagcaagt tcaatagaat agccaaccgt tggctctaaa tcatctataa ctaatataat
2881 agtttattca tacaatagtt atctataaaa atatactgca ccattaat
//