LOCUS AK100673 2278 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023112P17, full insert
sequence.
ACCESSION AK100673
VERSION AK100673.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2278)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2278
/clone="J023112P17"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 202..1806
/db_xref="Osa1:LOC_Os03g20430"
/db_xref="RAP-DB:Os03g0320400"
/note="(RAP Annotation release2) SRA-YDG domain
containing protein"
/note="(Rice Genome Annotation Project) histone-lysine
N-methyltransferase, H3 lysine-9 specific SUVH8,
putative, expressed"
/note="mapping to R03-TIGRv4S1-000732F (Chr.3: short
arm=11538994, long arm=11541397, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG94710.1"
/translation="MESNQHKASDPQDSMVHLDLDEDKIMVTSALPCPSMSVGKSVMR
KRGRPSRHARGTSLSSVTPEGCKKMEGRSYNLRSDSTILLRNSCLLIADGSTKQKRSW
GLDKDDLHIPFFQISDNPREAVDDILMTFGGLHRRIMQLIDVKMASKQLVFQALNLMR
KVGYHVNKDKRVGEVPGVKIGDIFYSRIEMLLVGLHSNINRGIEFMSGAFINKEDKIA
TCIVSSGMYENGDDDPYTLVYNGQGKVHHKLERGNYSLNQSFIRRNHIRLIRSEPNPL
VRLGSKEKIYIYDGLYKIEEKYRQTTKSRSNLKFNKLVRELGQPNGIVVWKNTQKWRE
NPSCRDHVIMPDMSNGAEIARVCVVNNIDSEDAPNNFTYSTKLDNGNHMVSANKMCVC
KCTSSCLGEDNCSCLKTNGSYLPYNSSGILVCRKTMIYECNDSCACTINCSNRVVQRG
SYLHFEVFKTMDRGWGLRSWDPIPAGAFVCEYVGVVIDKDSLVEEDEYIFEVTRPEHN
LKWNYLPELIGEPSFYDMNDTFKKLC"
BASE COUNT 691 a 425 c 512 g 650 t
ORIGIN
1 gaccctgcac accaccctgt tgcttcccta catccgctac ttgagactcc tcccctatca
61 cctatctctt cctaccccat cacatcccgt cctcgatcag atacacctcc tcttgtcact
121 tccctctatc catcccatct ccttcaccaa ggccaccact ccccctcatc atcatctcct
181 caaccacccc gtgtgtgcac aatggaaagt aaccaacaca aagcatcaga tccacaggat
241 tctatggttc atttagatct ggatgaagat aagataatgg tgacatcagc attaccatgt
301 ccttcaatgt ccgtgggaaa atcggttatg aggaagaggg gaagaccaag caggcatgca
361 cgaggaactt cgttgtcttc tgttacccca gaagggtgca agaagatgga gggtcgatca
421 tataatttgc gtagtgattc aacaattttg ttgagaaatt catgtttgct aatagctgat
481 ggatcgacaa aacagaagcg atcttgggga cttgacaagg atgacttgca tatacctttc
541 tttcaaattt cagataatcc tagggaagct gttgatgata tactcatgac atttggtgga
601 ctacatcgga ggatcatgca gttgatagat gtgaaaatgg cttcaaaaca gcttgtcttc
661 caagcattga acctcatgag aaaagttgga tatcatgtta acaaggacaa gagggttgga
721 gaggtcccag gagttaaaat tggtgacata ttctactcta gaattgagat gctcttggta
781 gggctacata gtaacatcaa tagaggaatt gaattcatgt ctggtgcttt tattaataag
841 gaagataaga tagctacatg cattgtgtca tctggaatgt atgagaatgg tgatgatgac
901 ccatatactt tggtatataa tggccaaggc aaagtccacc ataagcttga gagaggtaac
961 tattcgttga atcagagttt tattagaagg aatcatatta gacttattcg tagtgaacca
1021 aatccattgg ttaggctagg ctcaaaggaa aaaatataca tatatgatgg tctttataag
1081 atcgaagaaa agtacagaca aacaacaaaa tctcgttcta acttaaagtt caacaagttg
1141 gtcagggaac taggccagcc taatggcatt gtagtatgga agaatactca gaaatggagg
1201 gaaaatccat cttgtagaga tcatgtcata atgcctgaca tgtcaaatgg tgcagaaata
1261 gctcgtgttt gtgttgtaaa caacattgat agtgaggatg ctcctaacaa ctttacctat
1321 tcaactaaac ttgataatgg gaatcatatg gtttcagcaa acaagatgtg tgtctgcaaa
1381 tgcacaagct catgccttgg tgaagacaat tgctcttgtt tgaaaacaaa tggcagctat
1441 ttaccttaca actcttcagg aatacttgtt tgtcgaaaga ctatgatata tgagtgcaat
1501 gattcatgtg cttgcacaat taattgctcg aaccgagtgg tacagagggg ttcctatcta
1561 cactttgaag tgttcaagac gatggatcga ggttggggcc ttcgcagttg ggatcccatt
1621 ccggcgggtg catttgtatg tgaatatgtt ggtgtagtta ttgacaaaga tagcttagtt
1681 gaagaagatg aatacatatt tgaggttact agaccagagc ataatttaaa atggaactat
1741 ttaccagaat tgataggtga accttctttc tatgacatga atgatacatt caagaagttg
1801 tgttaacaac caaatttggt aatatcggca ttgggaaaga agattagatt gaagcgaagt
1861 cggaggcgga gatcaagttc ggaaacagag cagggattgg ctggagtcca gattagctac
1921 gataagatcg gctgagtctg agtcggacta ggtaagccga tgtagccgat cctagcaata
1981 caacttgatg tgtgatgtcg ggttggattg aggtgcttca aggtgattgc cgcacatgga
2041 tagagtcctg agggggcaat tgtatctatt agttaggatg ttttatgtaa tttccttaga
2101 gatatgattg ggcaaaagtc tgccgcaaag acttatagta tcttagagtt tgttagagat
2161 agtagtcgtg tccgttatgg acatatcttg taattctcgg gtataaatat acccgagccc
2221 tatgtaactt ttaacacacg ttcaatacaa tctcggcgca tcgccaccct tttacttt
//