LOCUS AK100546 3389 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023102M20, full insert sequence. ACCESSION AK100546 VERSION AK100546.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 3389) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..3389 /clone="J023102M20" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 782..3208 /db_xref="Osa1:LOC_Os06g09450" /note="(Rice Genome Annotation Project) sucrose synthase 1, putative, expressed" /note="mapping to R06-TIGRv4S1-000265R (Chr.6: short arm=4795714, long arm=4801438, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG94649.1" /translation="MAAKLARLHSLRERLGATFSSHPNELIALFSRYVNQGKGMLQRH QLLAEFDALIEADKEKYAPFEDILRAAQEAIVLPPWVALAIRPRPGVWDYIRVNVSEL AVEELSVSEYLAFKEQLVDGHTNSNFVLELDFEPFNASFPRPSMSKSIGNGVQFLNRH LSSKLFQDKESLYPLLNFLKAHNHKGTTMMLNDRIQSLRGLQSSLRKAEEYLMGIPQD TPYSEFNHRFQELGLEKGWGDCAKRVLDTIHLLLDLLEAPDPANLEKFLGTIPMMFNV VILSPHGYFAQSNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDITPKILIVTR LLPDAVGTTCGQRVEKVIGTEHTDILRVPFRSENGILRKWISRFDVWPFLETYTEDVA NEIMREMQAKPDLIIGNYSDGNLVATLLAHKLGVTQCTIAHALEKTKYPNSDIYLDKF DSQYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHIAFTLPGLYRVVHG IDVFDPKFNIVSPGADMSVYFPYTEADKRLTAFHPEIEELLYSEVENDEHKFVLKDKN KPIIFSMARLDRVKNMTGLVEMYGKNAHLRDLANLVIVCGDHGNQSKDREEQAEFKKM YGLIDQYKLKGHIRWISAQMNRVRNGELYRYICDTKGVFVQPAFYEAFGLTVIEAMTC GLPTIATCHGGPAEIIVDGVSGLHIDPYHSDKAADILVNFFEKCKQDSTYWDNISQGG LQRIYEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYIEMFYALKYRSLASAVP LAVDGESTSK" BASE COUNT 786 a 782 c 838 g 983 t ORIGIN 1 gatgttgctt ccattgccaa actgttccct tttacccata ggctgattga tcttggctgt 61 gtgatttttt gcttgggttt ttgagctgat tcagcggcgc ttgcagcctc ttgatcgtgg 121 tcttggctcg cccatttctt gcgattcttt ggtgggtcgt cagctgaatc ttgcaggagt 181 ttttgctgac atgttcttgg gtttactgct ttcggtaaat ctgaaccaag aggggggttt 241 ctgctgcagt ttagtgggtt tactatgagc ggattcgggg tttcgaggaa aaccggcaaa 301 aaacctcaaa tcctcgacct ttagttttgc tgccacgttg ctccgcccca ttgcagagtt 361 ctttttgccc ccaaattttt ttttacttgg tgcagtaaga atcgcgcctc agtgattttc 421 tcgactcgta gtccgttgat actgtgtctt gcttatcact tgttctgctt aatctttttt 481 gcttcctgag gaatgtcttg gtgcctgtcg gtggatggcg aaccaaaaat gaagggtttt 541 ttttttttga actgagaaaa atctttgggt ttttggttgg attctttcat ggagtcgcga 601 ccttccgtat tcttctcttt gatctccccg cttgcggatt cataatattc ggaacttcat 661 gttggctctg cttaatctgt agccaaatct tcatatctcc agggatcttt cgctctgtcc 721 tatcggattt aggaattagg atctaactgg tgctaatact aaaggttcct gaaattgagt 781 catggctgcc aagctagctc gcctccacag tctccgcgaa cgcctcggtg ccaccttctc 841 gtctcatccc aatgagttga ttgcactctt ctctaggtat gttaaccagg gaaagggaat 901 gctccagcgt caccagctgc ttgcggagtt cgatgccttg atcgaagctg acaaagagaa 961 atatgctccc tttgaagaca ttctccgggc tgctcaggaa gccattgtgc tgccgccctg 1021 ggttgcactg gccatcaggc caaggcctgg tgtctgggac tacattcggg tgaatgtaag 1081 tgagttggca gtggaagagc tgagtgtttc tgagtacttg gcattcaagg aacagcttgt 1141 tgatggacac accaacagca actttgttct tgagcttgat tttgagccct tcaatgcctc 1201 cttcccgcgc ccgtccatgt ccaagtccat cggaaatggg gtgcagttcc ttaaccgtca 1261 cctgtcgtcc aagttgttcc aggacaagga gagcctctac cccttgctga acttcctgaa 1321 agcccataac cacaagggca cgacaatgat gctgaatgac agaattcaga gccttcgtgg 1381 gctccaatca tcccttagaa aggcagaaga atatctgatg ggcattcctc aagacacgcc 1441 ctactcggag ttcaaccaca ggttccaaga gctcggtttg gagaagggtt ggggtgactg 1501 tgcaaagcgt gtgcttgaca ccatccactt gcttcttgac cttcttgagg cccctgatcc 1561 ggccaacttg gagaagttcc ttggaactat tccaatgatg ttcaatgttg ttatcctgtc 1621 tccgcatgga tactttgccc aatccaatgt gttgggatac cctgatactg gtggtcaggt 1681 tgtgtacatt ttggaccaag tccgcgcttt ggagaatgag atgcttttga ggatcaagca 1741 gcaaggcctt gatatcacac ctaagatcct cattgtaacc aggctgttgc ctgatgctgt 1801 tggtactaca tgcggccagc gtgtggagaa ggttattgga actgagcaca ctgacattct 1861 tcgtgttcca ttcaggagtg agaatggtat cctccgcaag tggatctccc gttttgatgt 1921 ctggccattc ctggaaacat acactgagga tgttgcaaac gaaattatga gggaaatgca 1981 agccaaacct gatctcatca ttggcaatta cagtgatgga aaccttgttg ccactctgct 2041 ggctcacaaa ttaggagtta cccagtgtac cattgctcat gccttggaga aaaccaaata 2101 ccccaactca gacatatact tggacaagtt tgacagccag taccacttct catgccaatt 2161 cactgctgat cttatcgcca tgaatcacac tgatttcatc atcaccagta cattccaaga 2221 aattgctgga agcaaggaca ctgtggggca gtatgaatca cacattgcat tcacccttcc 2281 tgggctttac cgagttgtgc atggcataga tgtttttgat cccaagttca acattgtctc 2341 tcctggagct gacatgagtg tctacttccc gtacaccgag gctgacaaga ggctcactgc 2401 tttccaccct gaaattgagg agcttctcta cagtgaagtc gagaacgatg aacacaagtt 2461 tgtattgaag gacaagaaca agccaatcat cttctccatg gctcgtcttg accgagtgaa 2521 gaacatgaca ggtctggttg agatgtatgg taagaatgca catctcaggg atttggcaaa 2581 ccttgtgatt gtttgtggtg accacggcaa tcagtccaag gacagggagg agcaggctga 2641 gttcaagaag atgtacggtc tcattgacca gtacaagttg aaggggcata tccgctggat 2701 ctcagctcag atgaaccgtg ttcgtaacgg ggagttgtac cgatacattt gtgacaccaa 2761 gggagtcttt gtccagcctg cattctatga agcgtttggt ctgactgtca tcgaagccat 2821 gacatgtggt ttgccaacaa tcgcaacatg ccatggtggc cctgctgaga ttattgttga 2881 tggggtgtct ggtctgcaca ttgatcctta ccacagtgac aaggctgctg atatcttggt 2941 caacttcttt gagaagtgca agcaggattc aacctactgg gacaatattt cacagggagg 3001 tctgcagagg atttacgaga agtacacctg gaagctgtac tctgagaggc tgatgacctt 3061 gactggtgta tacggattct ggaagtacgt aagcaacctt gagaggcgcg agactcgccg 3121 ttacattgag atgttctatg ctctgaaata ccgcagcctg gccagcgccg tcccattggc 3181 tgtcgatgga gagagcacat ccaagtaatg gaggggaaaa tatgcatctt cagcaggaga 3241 agccgtcagc tgcattcgaa tttgataatt ttctgtagtt gtcatttggc atccatgttt 3301 gccatggatg tgtactatgt ctaaggtttc agtacttttg cgagattttg ggcagtgctt 3361 gcctcaaata aacgccggtt cctggtgtt //