LOCUS       AK100546                3389 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J023102M20, full insert
            sequence.
ACCESSION   AK100546
VERSION     AK100546.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3389)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..3389
                     /clone="J023102M20"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             782..3208
                     /db_xref="Osa1:LOC_Os06g09450"
                     /note="(Rice Genome Annotation Project) sucrose synthase
                     1, putative, expressed"
                     /note="mapping to R06-TIGRv4S1-000265R (Chr.6: short
                     arm=4795714, long arm=4801438, direction=reverse) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG94649.1"
                     /translation="MAAKLARLHSLRERLGATFSSHPNELIALFSRYVNQGKGMLQRH
                     QLLAEFDALIEADKEKYAPFEDILRAAQEAIVLPPWVALAIRPRPGVWDYIRVNVSEL
                     AVEELSVSEYLAFKEQLVDGHTNSNFVLELDFEPFNASFPRPSMSKSIGNGVQFLNRH
                     LSSKLFQDKESLYPLLNFLKAHNHKGTTMMLNDRIQSLRGLQSSLRKAEEYLMGIPQD
                     TPYSEFNHRFQELGLEKGWGDCAKRVLDTIHLLLDLLEAPDPANLEKFLGTIPMMFNV
                     VILSPHGYFAQSNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDITPKILIVTR
                     LLPDAVGTTCGQRVEKVIGTEHTDILRVPFRSENGILRKWISRFDVWPFLETYTEDVA
                     NEIMREMQAKPDLIIGNYSDGNLVATLLAHKLGVTQCTIAHALEKTKYPNSDIYLDKF
                     DSQYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHIAFTLPGLYRVVHG
                     IDVFDPKFNIVSPGADMSVYFPYTEADKRLTAFHPEIEELLYSEVENDEHKFVLKDKN
                     KPIIFSMARLDRVKNMTGLVEMYGKNAHLRDLANLVIVCGDHGNQSKDREEQAEFKKM
                     YGLIDQYKLKGHIRWISAQMNRVRNGELYRYICDTKGVFVQPAFYEAFGLTVIEAMTC
                     GLPTIATCHGGPAEIIVDGVSGLHIDPYHSDKAADILVNFFEKCKQDSTYWDNISQGG
                     LQRIYEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYIEMFYALKYRSLASAVP
                     LAVDGESTSK"
BASE COUNT          786 a          782 c          838 g          983 t
ORIGIN      
        1 gatgttgctt ccattgccaa actgttccct tttacccata ggctgattga tcttggctgt
       61 gtgatttttt gcttgggttt ttgagctgat tcagcggcgc ttgcagcctc ttgatcgtgg
      121 tcttggctcg cccatttctt gcgattcttt ggtgggtcgt cagctgaatc ttgcaggagt
      181 ttttgctgac atgttcttgg gtttactgct ttcggtaaat ctgaaccaag aggggggttt
      241 ctgctgcagt ttagtgggtt tactatgagc ggattcgggg tttcgaggaa aaccggcaaa
      301 aaacctcaaa tcctcgacct ttagttttgc tgccacgttg ctccgcccca ttgcagagtt
      361 ctttttgccc ccaaattttt ttttacttgg tgcagtaaga atcgcgcctc agtgattttc
      421 tcgactcgta gtccgttgat actgtgtctt gcttatcact tgttctgctt aatctttttt
      481 gcttcctgag gaatgtcttg gtgcctgtcg gtggatggcg aaccaaaaat gaagggtttt
      541 ttttttttga actgagaaaa atctttgggt ttttggttgg attctttcat ggagtcgcga
      601 ccttccgtat tcttctcttt gatctccccg cttgcggatt cataatattc ggaacttcat
      661 gttggctctg cttaatctgt agccaaatct tcatatctcc agggatcttt cgctctgtcc
      721 tatcggattt aggaattagg atctaactgg tgctaatact aaaggttcct gaaattgagt
      781 catggctgcc aagctagctc gcctccacag tctccgcgaa cgcctcggtg ccaccttctc
      841 gtctcatccc aatgagttga ttgcactctt ctctaggtat gttaaccagg gaaagggaat
      901 gctccagcgt caccagctgc ttgcggagtt cgatgccttg atcgaagctg acaaagagaa
      961 atatgctccc tttgaagaca ttctccgggc tgctcaggaa gccattgtgc tgccgccctg
     1021 ggttgcactg gccatcaggc caaggcctgg tgtctgggac tacattcggg tgaatgtaag
     1081 tgagttggca gtggaagagc tgagtgtttc tgagtacttg gcattcaagg aacagcttgt
     1141 tgatggacac accaacagca actttgttct tgagcttgat tttgagccct tcaatgcctc
     1201 cttcccgcgc ccgtccatgt ccaagtccat cggaaatggg gtgcagttcc ttaaccgtca
     1261 cctgtcgtcc aagttgttcc aggacaagga gagcctctac cccttgctga acttcctgaa
     1321 agcccataac cacaagggca cgacaatgat gctgaatgac agaattcaga gccttcgtgg
     1381 gctccaatca tcccttagaa aggcagaaga atatctgatg ggcattcctc aagacacgcc
     1441 ctactcggag ttcaaccaca ggttccaaga gctcggtttg gagaagggtt ggggtgactg
     1501 tgcaaagcgt gtgcttgaca ccatccactt gcttcttgac cttcttgagg cccctgatcc
     1561 ggccaacttg gagaagttcc ttggaactat tccaatgatg ttcaatgttg ttatcctgtc
     1621 tccgcatgga tactttgccc aatccaatgt gttgggatac cctgatactg gtggtcaggt
     1681 tgtgtacatt ttggaccaag tccgcgcttt ggagaatgag atgcttttga ggatcaagca
     1741 gcaaggcctt gatatcacac ctaagatcct cattgtaacc aggctgttgc ctgatgctgt
     1801 tggtactaca tgcggccagc gtgtggagaa ggttattgga actgagcaca ctgacattct
     1861 tcgtgttcca ttcaggagtg agaatggtat cctccgcaag tggatctccc gttttgatgt
     1921 ctggccattc ctggaaacat acactgagga tgttgcaaac gaaattatga gggaaatgca
     1981 agccaaacct gatctcatca ttggcaatta cagtgatgga aaccttgttg ccactctgct
     2041 ggctcacaaa ttaggagtta cccagtgtac cattgctcat gccttggaga aaaccaaata
     2101 ccccaactca gacatatact tggacaagtt tgacagccag taccacttct catgccaatt
     2161 cactgctgat cttatcgcca tgaatcacac tgatttcatc atcaccagta cattccaaga
     2221 aattgctgga agcaaggaca ctgtggggca gtatgaatca cacattgcat tcacccttcc
     2281 tgggctttac cgagttgtgc atggcataga tgtttttgat cccaagttca acattgtctc
     2341 tcctggagct gacatgagtg tctacttccc gtacaccgag gctgacaaga ggctcactgc
     2401 tttccaccct gaaattgagg agcttctcta cagtgaagtc gagaacgatg aacacaagtt
     2461 tgtattgaag gacaagaaca agccaatcat cttctccatg gctcgtcttg accgagtgaa
     2521 gaacatgaca ggtctggttg agatgtatgg taagaatgca catctcaggg atttggcaaa
     2581 ccttgtgatt gtttgtggtg accacggcaa tcagtccaag gacagggagg agcaggctga
     2641 gttcaagaag atgtacggtc tcattgacca gtacaagttg aaggggcata tccgctggat
     2701 ctcagctcag atgaaccgtg ttcgtaacgg ggagttgtac cgatacattt gtgacaccaa
     2761 gggagtcttt gtccagcctg cattctatga agcgtttggt ctgactgtca tcgaagccat
     2821 gacatgtggt ttgccaacaa tcgcaacatg ccatggtggc cctgctgaga ttattgttga
     2881 tggggtgtct ggtctgcaca ttgatcctta ccacagtgac aaggctgctg atatcttggt
     2941 caacttcttt gagaagtgca agcaggattc aacctactgg gacaatattt cacagggagg
     3001 tctgcagagg atttacgaga agtacacctg gaagctgtac tctgagaggc tgatgacctt
     3061 gactggtgta tacggattct ggaagtacgt aagcaacctt gagaggcgcg agactcgccg
     3121 ttacattgag atgttctatg ctctgaaata ccgcagcctg gccagcgccg tcccattggc
     3181 tgtcgatgga gagagcacat ccaagtaatg gaggggaaaa tatgcatctt cagcaggaga
     3241 agccgtcagc tgcattcgaa tttgataatt ttctgtagtt gtcatttggc atccatgttt
     3301 gccatggatg tgtactatgt ctaaggtttc agtacttttg cgagattttg ggcagtgctt
     3361 gcctcaaata aacgccggtt cctggtgtt
//