LOCUS AK100500 2211 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023099G24, full insert
sequence.
ACCESSION AK100500
VERSION AK100500.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2211)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2211
/clone="J023099G24"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2211
/db_xref="Osa1:LOC_Os04g34610"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R04-TIGRv4S1-000466R (Chr.4: short
arm=20757390, long arm=20761508, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 557 a 482 c 518 g 654 t
ORIGIN
1 gtaagcacac ccccctctcg tctcgtcgtc tccgttgccg gcacgcacgc cgccgccgcc
61 tcgctcccct ctcttctggc gcggttgcgg tgccgccgcc ccgtcctacg accctgctgc
121 ggggacgcgg cttcaaggag gacctgacaa aatggcaatg gggatgagag cccgggaatc
181 tgtgaacatg tcggaggacc taactcaggc cattgcgcct tatgctactg ccctgcacga
241 tgcgtcgctc cagtcccact gttcgtcatg cttccaccgc ataccggctc aatcccccca
301 cgacatgtct tgcacgatgt gcggttctgt tcgatattgc tgctcggact gcttgatctc
361 ggactgtgaa gtgcattcat cttctggtga atgttgcttc tttgtgaaac atctcaggga
421 agcctcccca tccactctta ccgaagaaac gagcgatatc cgtgctgctc tccgccttct
481 ctattcgttt gagacgcgtg gtcttgtttc atctgattcg gtcagcagct ccaataggat
541 cggcgggctt tctgcaagtg gtattaggga ggttctggag gagggtgggg agattgccga
601 gggggtgctg gaggggagtt tgttgatgtt gtctgccaga aaatcgagga tgaagaacta
661 tgttggtctc tccaatggct tgacgataga gaaggtggca ttgtgggcag tgatgacaaa
721 tagtgttgag aatgaagggt gtacttcaaa caaaccagaa tcatgtgtag ttcctgttag
781 caaaggagct gcgccagatg cggtaatgga gtttaactga tggttttatt tagtattcac
841 taaacttttg cttgcatcat ttggaggtat ctattacaca ctgtagagtg agttattgga
901 ctctgtattg gttgcagtgg catgcttggc agaatgaaga agctggtttt gctcatgctc
961 aatgtaaata tggtccacga gttgttgttc gctgcacaaa gccaatcaac aagggagatg
1021 aagttttcat aacatacatt gatcttcttc agacaaggtg tgatgctagg aacttgaaat
1081 cgccacataa tgctgttaca gacccagcaa ttgaggattt ggacaataac ttacaacagg
1141 caatatctga atactcattc cttgatgact ctaaagcttg ctgtgatgta attgaaagca
1201 tgctttcaga aaacttgatg aatgatttgc agcaagagga actttcacca aggaaataca
1261 tactacaccc cctacaccat atcagtgtca gcagtttcat gatacttgcc tctgcatacc
1321 ggtgcagtgc cttcaaatca agcactgata atttgcatgg agaaaattgt gatttcattt
1381 tcagaatgac caaagctgca gcagcttatt caatagttct tgcaggggct acacatcact
1441 tgtttttatc tgaatgttcc tttgtgaccc ttctgtcgca ttttttgcta agcactggac
1501 agtccatatt agattttgct gaatgtatta agggagaaac aaggaaaaac atgcctgaag
1561 ctatcttcag ctttgcttca tgttcaacaa attcggcaaa acatgattct gtgcggtaca
1621 atcaattcag atcaacttgt gagaagtttg gcaagccctt gttatcttta tcgttgcagt
1681 gctggccatt tttagcccaa ggcttaccct gcctggaaaa gataaagaac cccatagatt
1741 tcagttggct tggtccagca atatttcagg ctttccagct ttctgaggaa gattctttca
1801 acctttctgg taaacatgcg ccagcaactc tcatcgagca acagaaagag tgcattctga
1861 gcttagctgt ttgctgcatc acctacagca aataccttgc aagtatatgc tatggtccag
1921 aacattattt ggcaaatcgt gctaaagatc tgcttgaatg tatcaatcat gtacaatgat
1981 ctctctgtga tatatctctg gagctgatgt ttgatgtgct ctattgtctt tatcaaggtg
2041 agcagcttac ttttaagatt gttgtaggac tgaactgata gtttctttta caagcagaac
2101 ttatcagcaa tttttgtcaa gggggagtta catggatgct attaacgttt tctgttttat
2161 tgtgattaac aaagctacta tagattaaca gtgacaaaat cagtttgtgg g
//