LOCUS AK100391 2754 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023086A12, full insert
sequence.
ACCESSION AK100391
VERSION AK100391.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2754)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2754
/clone="J023086A12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 195..2420
/db_xref="Osa1:LOC_Os02g40770"
/db_xref="RAP-DB:Os02g0621100"
/note="(RAP Annotation release2) Similar to
Su(VAR)3-9-related protein 4"
/note="(Rice Genome Annotation Project) pre-SET motif
family protein, expressed"
/note="mapping to R02-TIGRv4S1-001004F (Chr.2: short
arm=24702204, long arm=24711416, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG94579.1"
/translation="MAKPNGKEKTGDTGLSMAPPKISKDRFDAAIRAMADIGILKETA
APVLNNLLNLFDYNWVHIEADNYLALADAIFCDSDPKEGQKRQANETNLDADQSNKKL
KTKKRSQNPTSKMHGNDNREFVEAPPQQGRGTLSARTVNGKKVTRAHLELPSSQLLIK
EPHTCPSIAKNTTIVENNSAVLCHGQDLQTFEVPVATTCPQVVAPSTRKDARRTSGAR
HDQKHEGVSGAHERNRAVACSNQEIVSSKDSPSNIEVVLSNYGAGKLSFTYNSSLANR
SDFHLPDIKLICKKMEARCLRKYKSLEPNFSFKNLIKDTCQCIVESSGPRHEGIIQTV
PALDILSKPSVPQILQSNQANSAFMPPNNVMSLGGTSSSCTVAGVSQNSSNMPVVPHQ
LHIGANRPPHDVNDITKGEERLRIPIINEYGNGILPPPFHYIPHNITLQEAYVNISLA
RIGDDNCCSDCFRDCLAQSLPCACAAETGGEFAYTTDGLLKGAFLDSCISMIREPLKH
PHFYCKICPNERMKIEVNSDSSNTEMNPGPCKGHLTRKFIKECWRKCGCTRNCGNRVV
QRGITRHLQVFLTPEKKGWGLRSTEKLPRGAFVCEYVGEILTNIELYDRTIQKTGKAK
HTYPLLLDADWGTEGVLKDEEALCLDATFYGNVARFINHRCFDANIIGIPVEIETPDH
HYYHLAFFTTRIIEPFEELTWDYGIDFDDVDHPVKAFKCHCGSEFCRDKTRRSKSRAR
V"
BASE COUNT 794 a 625 c 597 g 738 t
ORIGIN
1 gtgcaggtgg cgcctctaat tcctcctcct cgcgccctag tcccctcgcc ttcccctccc
61 gtctcctcgc ccgccggccg ccgcctgcga cgatccccat cccgcgagcg gcagcggtac
121 cggcggtcct ctgccgcacc ctcgccgcgg tgagctcccg gtcagcagtt tccacatctc
181 agctaaggac tggaatggcc aaacccaatg gcaaagagaa aacgggtgac acgggattgt
241 cgatggctcc tccaaagatt tccaaggata gatttgatgc tgctatcaga gccatggctg
301 atattggtat cctaaaggaa actgctgcgc ccgtgttgaa taatctacta aacttattcg
361 attacaactg ggtgcatata gaagctgata attatctggc tcttgctgat gctatatttt
421 gtgattcaga tcccaaagaa ggacagaaaa ggcaagctaa tgagacaaat cttgatgcag
481 accaatctaa caagaagctt aagacaaaaa agcgttctca aaatcctaca tccaagatgc
541 atggcaatga caatagagag tttgttgaag ctccaccaca gcagggacga ggcacactgt
601 ctgcccgaac tgttaatggg aagaaagtca ccagggccca cttggagttg ccttcttcac
661 aattactgat caaggaacca catacatgcc ctagcattgc aaagaataca acaattgttg
721 aaaataattc tgctgtatta tgccatggtc aagaccttca aacttttgag gtcccagtag
781 caactacttg tccgcaagtt gtagccccca gtactcgcaa agatgcacgt aggacttctg
841 gtgctcgcca tgatcagaag catgaaggtg tatctggtgc gcatgaaagg aacagggctg
901 ttgcgtgtag caaccaggaa attgtaagca gcaaggattc tccatccaac attgaggtag
961 ttttgtcaaa ttatggagct gggaaactat cattcacata caactcttcc ctggcaaacc
1021 gttctgattt tcatctgcct gacattaaat taatttgcaa gaaaatggag gctagatgcc
1081 ttaggaaata caagagccta gaacccaatt tctcttttaa gaatcttatt aaagatactt
1141 gccagtgtat tgttgaatct agtggaccta gacatgaagg catcatacaa actgttcctg
1201 ccctggacat tctgtccaaa ccttcagtgc cgcaaatatt gcagtcaaat caagctaatt
1261 ccgcttttat gccacctaat aatgtcatga gccttggtgg tacttcttcc tcttgcactg
1321 ttgctggagt tagccagaat tctagtaata tgccggttgt tccgcatcaa ctacatattg
1381 gtgccaacag accacctcat gatgtcaatg atatcacaaa aggtgaagaa cgtttaagga
1441 ttccaattat taatgaatat ggcaatggga ttcttcctcc tccatttcac tacataccac
1501 acaatatcac actccaagaa gcctatgtaa acatctccct tgctagaatc ggagatgaca
1561 attgctgttc tgattgtttc agagattgtc tggcacaatc acttccttgt gcgtgtgctg
1621 cagaaacagg aggagagttt gcttatacaa cagatggcct tcttaaggga gcatttctag
1681 atagctgtat ctcaatgatt cgagaaccac ttaaacatcc ccatttctac tgcaagattt
1741 gcccaaacga acgaatgaag atagaagtaa attctgattc atcaaacaca gaaatgaatc
1801 ctggtccttg taaaggacac cttacaagga aattcatcaa ggagtgctgg agaaaatgcg
1861 gctgcactag aaattgtgga aaccgtgtgg tgcagcgagg catcacacgc catttacagg
1921 tgttcttaac ccctgaaaaa aaaggatggg gattgcgcag tactgagaaa cttcctcgag
1981 gtgcttttgt ttgtgagtat gttggtgaaa tattaacgaa cattgagttg tatgaccgta
2041 caattcaaaa gactggtaaa gcaaagcaca catacccatt gttacttgat gccgactggg
2101 gtactgaagg tgttcttaag gatgaggaag ccctttgtct agatgccacg ttttatggta
2161 acgtcgcaag atttataaac cacaggtgct ttgatgctaa tattatagga atacctgttg
2221 agatcgagac gcccgaccac cattattacc atctggcgtt cttcacaaca aggataatag
2281 agccttttga ggaactcaca tgggactatg ggattgattt tgatgatgtc gaccatcctg
2341 tgaaggcatt caaatgtcat tgcggaagtg agttttgccg agacaaaacg cgcagatcta
2401 aatcgagggc gcgggtttaa cctatgaatt ctctactctg ctattcaagt gattcaagga
2461 agtcaatgca gagccattga tggtatcgtc cagaaagatg atatagtaat ttttctctgg
2521 aataggataa acaatccaga ttccagagtt acagactgct ggttcagcac ttaaatattc
2581 caacagctca tacgaactgc tgtccttttt ttccaagctt ggttgcccgc aaagcagtat
2641 gcttggttgc ccgttctttg ttccttttac caataccaag tgatgtaaag aattctggaa
2701 tgtgaactct ctgccatgat atagctctag ctcaatgcat tatattgggg aacc
//