LOCUS AK100340 2159 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023081N10, full insert
sequence.
ACCESSION AK100340
VERSION AK100340.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2159)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2159
/clone="J023081N10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2159
/db_xref="Osa1:LOC_Os01g27170"
/note="(Rice Genome Annotation Project) potassium
transporter 3, putative, expressed"
/note="mapping to R01-TIGRv4S1-000709R (Chr.1: short
arm=15479167, long arm=15481752, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 354 a 687 c 674 g 444 t
ORIGIN
1 accaccgcaa gtcccgcacc ttcctcctcg tcaccgtcct cttcggcgcc tccctcgtca
61 tcggcgacgg cgtcctcacg ccgcccatgt ccgtgctgtc gtccttctct gggctgcaag
121 tgcactcgac cgcgctgacg agcggggagg tggagatcct gtcgtgcacg gtgctggtgt
181 gcctgttcat ggtgcagcac tggggcacgc acagggtggc gttcctgttc gcgccggtgg
241 tcatcgtctg gctcctcctc ctcggggcgc tcggcgtcta caacatcgtg gtgtggaacc
301 ccagggtgct gcgcgccctc tccccttact acctcgtcag gttcttccag cacaccggca
361 aggacggctg gatctccctc gggggaattc tcctctccat gacagggacc gaagccatgt
421 atgcggatct tggccacttc acagctgcat ccataagggt tgcgttcgtg gggctcatct
481 acccgtgctt ggtgctgcag tacatggggc aggcggccgt cctgtccaaa tcaccccact
541 gcgacatcca cttcgtattc ttcgagtcca ttccaacggg catcttctgg ccggtgctgg
601 tgatcgcgac gctggcggcg atcgtgggca gccaggcggt gatatcggcg accttctcca
661 tcgtgcggca gtgcacggcg ctgggctgct tcccgcgcgt gaagatcgtg cacacgtcgc
721 ggcggatcca cgggcagatc tacagcccgg agatcaactg gatcctgatg ctgctgtgca
781 tcgccgtcac catggggctc cgcgacacca ccctcatcgg caacgcctac gggatggcgt
841 gcgcgggggt gatgctggtc accacgctgc tcatggcgct cgtcatcgtc ttcgtctggc
901 agtacagctg cctggtggcg gcgctcttcc tggtggcgtt cggcgtcgtc gaggcggtgt
961 acctgtcggc ggcgctgatg aaggtgcccc agggcgggtg gctgccgctg gtgctgtcgc
1021 tggtgttcgt cgccgtcatg tacgtgtggc actacggcac gcggcggaag caccagttcg
1081 acgtgcagaa caaggtgtcg ctcaggtgga tccacgcgct cggccccagc ctgggcatcg
1141 tgcgcgtccc ggggatcggc atcatctact ccgagctggc caccggcgtg ccggccatct
1201 tctcgcactt cgtcaccaac ctgccggcgt tccaccaggt gctcgtcttc atctgcgtca
1261 aggccgtgcc ggtgccgcac gtccgcgacg aggagcgcca cctcgtcggc cgcatcggcc
1321 cgcgggagtt ccgcatgtac cgctgcgtcg ttcggcacgg ctacaaggac gtgctcgccg
1381 aggacaccga cttcgagaac gacctcgtgc tgcggatcgc cgagttcgtg cagatggagg
1441 ccgacttcga ccagcgctgc agcatcagcg acgatggggt cgtcgcctcc gtggaggtgg
1501 agggccgcat ggccgtggtc ccgcggccca gcgaccttgc caggacgggg ctcctcatgc
1561 gggagcccgg cgaggaggag agcgtggtgg cgcgcgccgc cgcggccgcc aagccggagt
1621 cgctcatcca ctcgatgcac acgatgcacg aggcggagtc gccggggttc gcgagccggc
1681 ggcgcgtgcg gttcgaggtg gcgaaccagc acacggaccc cagggtgaag gaggagctga
1741 gcgcgctggt ggaggccaag cacgccggcg tcgcctacat catgggccac tcgtacatca
1801 aggcgaggaa gagctcgtcg gtgttcaaga agttcgccgt caacgtcgcc tacgctttcc
1861 tccgcaagaa ttgcagaggc cccggcctcg tgctcaacat cccgcacatc agccttatcg
1921 aagtcggcat gatctactac gtctagttta gatataaact gcttattacc cccaacattt
1981 tttattttat tttatacagt actaggtcgt ttattaggcc tgcagaacaa ttaatgcagg
2041 gcgtgtcatc gacatgtatt tagatttaat aataacgagc ttaataaacc acatatgcta
2101 atgctaggca ctaggcaggt aaagtgccag tgactctgca ataaagttct ttctccatg
//