LOCUS AK100314 1795 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023078N13, full insert
sequence.
ACCESSION AK100314
VERSION AK100314.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1795)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1795
/clone="J023078N13"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 633..1349
/db_xref="Osa1:LOC_Os01g09450"
/db_xref="RAP-DB:Os01g0190300"
/note="(RAP Annotation release2) Similar to
Auxin-responsive protein IAA26 (Indoleacetic acid-induced
protein 26) (Phytochrome-associated protein 1)"
/note="(Rice Genome Annotation Project) OsIAA2 -
Auxin-responsive Aux/IAA gene family member, expressed"
/note="mapping to R01-TIGRv4S1-000277F (Chr.1: short
arm=4813632, long arm=4815762, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG94546.1"
/translation="MAWRRGFGREEEDAAAAGESGLELCLGLPAYFSSSSSSKPSEGS
TAAPAFALRSNGTNASKPSGAAAAAPVVGWPPVRSFRRNLASSSSSSSKQAPPPPSSS
PQNGDKASKDGGAEKGMFVKINMDGVPIGRKVDLAAYGGYAQLSAAVDKLFRGLLAAQ
SAAADGEADAAAAGEMVGGGEYTLVYEDDEGDRMLVGDVPWQMFIATAKRLRVLKSSD
LPPPSLMRAAGSRKRAAADS"
BASE COUNT 312 a 505 c 525 g 453 t
ORIGIN
1 gattcactcc tgcccttgcg agcttcgcac gcagcgatcg agagatagaa cagcgagata
61 atggtagtag cagccgttgc ttgcttgcat tggcttagct aagctcaagc tagctcctac
121 tactcctacc tgcttcagct ttgcttcctg cgcatgagct agatgctccc tcgcatccat
181 ctcctagctt tccttccctt tctctcgctg ctgctgctgc tgctgcatcc tcctctcctg
241 tgacctgtca cagcttggcc taggactagt agggagtagt gattcttgct cgctttgttt
301 ctctgaatcc ttgcagcttg gcttggcctt ggccttggct gctttgaata gtacctgacg
361 gcctcgtggc gcgcaaacct tgtccctttt ccccgcaaat ccttgccgcc ttttggtcgc
421 tctctgctcc tcctcgtccc tcgcgccgtc accacctgct ctgtctcctc tccttcttgc
481 agctcgtcgt cgtcgtcgtt gatctttggc tatatattac tccctcctgc tgctgctgct
541 gcacggacgc agtgaggagg aagagctcgt gacttgtttt catcaggagt acagttgtca
601 gtagctgatc gaggtcgtcg tcgtcgccat cgatggcgtg gaggagaggg ttcggccggg
661 aggaggagga cgcggcggcg gcgggggaga gcggcctcga gctctgcctt ggcctccccg
721 cctacttctc ctcctcctcc tcctccaagc catcggaggg atcaaccgct gctcctgctt
781 ttgctctccg atccaatgga accaatgcct ccaagccaag cggggcagcg gcggcggcgc
841 cggttgtggg gtggccgccg gtgcggtcgt tccggcggaa cctcgcctcg tcgtcgtcat
901 cgtcgtccaa gcaggcgccg ccgccgccgt cgtcgtcgcc gcagaacggc gacaaggcga
961 gcaaagacgg cggcgcggag aagggcatgt tcgtgaagat caacatggac ggcgtcccga
1021 tcgggaggaa ggtcgacctc gcggcgtacg gcggctacgc ccagctctcc gccgccgtcg
1081 acaagctctt ccgcggcctc ctagccgctc agagcgctgc cgctgacggc gaggccgacg
1141 cggccgccgc cggagagatg gtcggcggcg gcgagtacac gctcgtctac gaggacgacg
1201 agggcgaccg gatgctcgtc ggcgacgttc cctggcagat gttcatcgcc accgcgaaga
1261 ggctgcgcgt gctcaagagc tccgacctgc cgccgccgtc gctgatgagg gcggcaggga
1321 gcaggaagag ggcagcagct gacagctgaa ctaatcactg tcaatttcag ctgctgctgc
1381 cgatgatgat gaattgatca tggtgtggtg cttggattga gatccctctg cagtcaaata
1441 cacggtcctt tgtcattgac aggtggacct agggattatc gggcctatat gttaatgata
1501 acgtcacatg actttaactg cagaggattt tgatctgtgg tgcttggctt tatggccatt
1561 ttgatgtctt tgggctgcat aattatatgt atacttacga gagatcatga cggtattagt
1621 ggtcatgatt agtagtacga tcgagtagca tggaacagtg ttgttaatta ctagtagctg
1681 ggtgattaag ctaatctatg gcgcctttgg tggtgtaatt ttggatgtag gcaggcatgt
1741 gtcaaattag ttatgtgttt tgttaattaa gcgatctagt taatgcgttt aagct
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