LOCUS AK100238 2683 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023052J15, full insert
sequence.
ACCESSION AK100238
VERSION AK100238.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2683)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2683
/clone="J023052J15"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 262..2346
/db_xref="Osa1:LOC_Os03g04890"
/db_xref="RAP-DB:Os03g0142500"
/note="(RAP Annotation release2) Zinc finger, RING-type
domain containing protein"
/note="(Rice Genome Annotation Project) protein binding
protein, putative, expressed"
/note="mapping to R03-TIGRv4S1-000177F (Chr.3: short
arm=2315899, long arm=2320767, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG94507.1"
/translation="MAPAWDRAKHALATRLCIRFPARQRAVEDAPAEDEAPPPPAAAA
ARAVPEEKLKSPSVSVRRLSSSGSWGKKKVCAICLGGIRTGGQALFTAECSHEFHFHC
ISSNVNHGNYVCPVCRAEWKELPFQGTQPGDTAYGRARVSTVNWPQDEGQMSVVRRLS
HGYSGNLQQQLAVFRTPEASIFNDDENIDPQSETVDDHNAVTNSVEIKTYSEFPAIQK
SERRKVFAILIHLKAPKSLDSVSSRAPLDLVTVLDVSGSMSGIKLSLLKRAMSFVIQT
LGPNDRLSVVAFSSTAQRLFPLRRMTLTGRQQALQAISSLVASGGTNIADALKKGAKV
VKDRRRKNPVSSIILLSDGQDTHSFLSGEADINYSILVPPSILPGTSHHVQIHTFGFG
TDHDSAAMHAIAETSNGTFSFIDAEGSIQDAFAQCMGGLLSVVVKDMRLCIECIDEGV
SLTSIKSGSYASQVAGNERSGLVDIGDLYADEERGFLVTLHVPAAHGQTVLIKPKCTY
LDAITMENVQLDGEEVIIQRPAYCVDCTMSPEVEREWHRVQATEDMSAARSAAEDGSF
SQAVSILESRRRILELHAAHSSDSQFLALIKELREMQDRVESRQRYEESGRAYMLSGL
SSHSWQRATARGDSTELTTLINTYQTPSMVDMLQRSQTILPSVVEMLNRSSTVATSKS
FSSYLPTSRHIA"
BASE COUNT 660 a 645 c 663 g 715 t
ORIGIN
1 ggttcgcgtt catcttctgc ttgttataat cctccattct ttttgctctt cctcgcactc
61 gcagcgccac caacgaaaac ccaaggcaac gcaccacgct gcacgcgtcc gtggtcgccg
121 cgaaacttgc gccgcgatgg ggaggccgat tcacccccaa atcctgccat cctgatccag
181 tttgatttct ccgtcgagca gcaacagcag cagcgaggat tgggtgtgcg aaaaggagtc
241 gcctttgagg gatcgtgagc aatggcgccg gcgtgggatc gcgccaagca cgcgctcgcc
301 accaggctct gcattcgctt cccggcgcgg cagagggccg tggaggatgc accggcggaa
361 gacgaggcgc ctccgccgcc tgcggcggcg gcggcgcgtg ctgtgccgga ggagaagttg
421 aagtcgccat cggtgtccgt gcggcggctt tcgagctctg ggagctgggg caagaagaag
481 gtatgtgcca tttgccttgg tggcatacgg acaggaggac aggccttgtt cacagctgaa
541 tgctcccacg aattccattt tcattgcatc tcctcaaatg tcaaccatgg caattacgtc
601 tgcccggtat gtcgtgctga gtggaaagaa cttcccttcc aaggaactca acctggagac
661 actgcttatg gacgagctag agtaagcact gtaaattggc cccaggatga ggggcagatg
721 tctgttgtcc gcaggctttc ccacggatat agtggaaacc ttcaacagca acttgctgtc
781 ttccgtactc cagaggcaag cattttcaat gatgatgaga acattgatcc tcagtctgaa
841 acagttgatg atcataatgc agttactaat tcagttgaga tcaagacata ttcagaattt
901 ccagccatac aaaaatcaga aagacggaag gtctttgcta tcttaataca tctgaaggct
961 ccaaagtcct tggactcggt gagctcccgt gcacctcttg accttgtgac tgtgcttgat
1021 gtcagtggca gcatgtcggg gataaaactt tcacttctta agcgtgccat gagttttgtc
1081 atccaaacac ttggacccaa tgaccgcctg tctgttgtag ccttttcatc tacagcacag
1141 aggctctttc cacttcgccg aatgacctta actggtcggc agcaagcctt gcaagccatt
1201 agttcccttg tcgcaagtgg tggcacaaac attgctgatg cgctaaagaa aggtgctaaa
1261 gtggtcaagg atcgtcggcg gaagaatcct gttagcagca taattcttct ttctgatggt
1321 caagacaccc attcatttct atctggtgag gctgatataa actacagtat acttgttccc
1381 ccttcaatcc ttcctgggac aagtcatcat gtgcaaatcc acacctttgg ttttggtaca
1441 gaccatgatt cggctgccat gcatgctatt gctgagacat ctaatggcac attttcattt
1501 attgatgctg aaggctcaat ccaagatgca tttgctcaat gtatgggtgg cctccttagc
1561 gttgtagtta aggatatgcg gctgtgcatc gagtgtatag atgaaggcgt gtctcttacc
1621 tccatcaagt caggcagcta tgcaagtcaa gtagctggaa atgaacgcag tggattggtt
1681 gatattggtg acctctatgc agatgaagag aggggatttc tggtcactct acatgtccca
1741 gccgcacatg gacagactgt gctgatcaaa ccaaaatgca catacctaga tgcaataact
1801 atggaaaatg tccagctaga cggtgaagaa gtgattattc agcgtcctgc atattgtgtt
1861 gactgtacaa tgtcacctga ggttgagcgt gaatggcacc gtgttcaagc cacagaggac
1921 atgtctgctg ctcgatctgc ggctgaggat ggctctttct ctcaggccgt gtcaatcctt
1981 gaaagccgta ggagaatact ggagttacat gcagcacact cttcagacag tcagttcttg
2041 gcattaatca aagagctaag ggagatgcag gatagggtgg agagccggca gaggtacgag
2101 gaatcaggca gggcttacat gctgtcaggc ctgagctcac actcatggca aagagcaact
2161 gcacgtggcg actcgacaga gctcacaacc cttattaata cttaccagac accatccatg
2221 gttgatatgc tacagcgctc gcagactatc ctgccctctg ttgtcgaaat gctgaaccgt
2281 tcttcaactg ttgctacttc aaagtccttc tctagctacc tcccaacctc ccgccatatt
2341 gcttgatcat aatgtagttc tagcaataac cagccaagtg ttagggaaat gaagatatcc
2401 aattctttag tttgttttct gcagatcttt ttccattatt tatagtgggc atgggattag
2461 attcattata aatgtttggg tatatactct agtttggtgt acatgggtaa actttgaaag
2521 ggaatgataa acagcatagc tgaaacaggt gaaaggaatg ctgacatttc atttgtttct
2581 catcatcatt ttatattaat tctcattttg tacataaaat tctccctagg gttgttccag
2641 gatgcttgta agctcttggc tgcattcaca ctttcgattg gtt
//