LOCUS AK100216 1905 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023045H21, full insert
sequence.
ACCESSION AK100216
VERSION AK100216.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1905)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1905
/clone="J023045H21"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 57..1256
/db_xref="Osa1:LOC_Os05g07790"
/db_xref="RAP-DB:Os05g0170000"
/note="(RAP Annotation release2) Protein of unknown
function DUF266, plant family protein"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R05-TIGRv4S1-000206R (Chr.5: short
arm=4173296, long arm=4178380, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG94494.1"
/translation="MKPPRRWMYGRGGGKGKPAGLLLLGVFLCLSVVLLLLLHGSSPS
LEGEGRKPEAVEAAGGGGEEEEVAVARAEVEEAPLPPGNARLAFLFIARNRLPLDLVW
DAFFRGDKEGRFSIFVHSRPGFVLTRATTRSGFFYNRQVNNSVQVDWGEASMIEAERV
LLAHALKDPLNERFVFVSDSCVPLYNFNYTYDYIMSSSTSFVDSFADTKAGRYNPRMD
PIIPVENWRKGSQWAVLTRKHAEVVVEDEEVLPEFQKHCRRRPLPEFWRDWDRPIPAE
AWKAHNCIPDEHYVQTLLAQHGLEEELTRRSVTHSAWDLSSSKDRERRGWHPVTYKIS
DATPALVKSIKDIDNIYYETENRKEWCTSNGKPAPCFLFARKFTRAAGLKLLDLSLIA
ANGASTM"
BASE COUNT 463 a 438 c 522 g 482 t
ORIGIN
1 ggctggattc gatgggcgct cggtgagatc cgaatccccc acggtggtcg ccggagatga
61 agccgccgcg gaggtggatg tacgggcggg gcggcgggaa ggggaagccg gcggggctgc
121 tgctgctggg ggtgttcctc tgcttgtcgg tggtgctgct gctgctgctg cacggctcgt
181 ccccgtcgct ggagggcgag gggaggaagc ctgaggcggt ggaggcggcg gggggagggg
241 gagaggagga ggaggtggcg gtggcgcggg cggaggtgga ggaggcgccg ctgccgccgg
301 ggaacgcgcg gctcgccttc ctcttcatcg cccgcaaccg cctcccgctc gacctcgtct
361 gggacgcctt cttccgcggt gacaaggaag ggagattctc catcttcgtg cactcgcggc
421 cggggttcgt gctcacccgc gccaccaccc gatccggctt cttctacaat cggcaggtca
481 acaacagcgt ccaggtggat tggggggagg cgagcatgat cgaggctgag cgtgttctac
541 tcgcccacgc gctcaaggac cccttaaacg agcgcttcgt gttcgtctcc gacagctgtg
601 tgccattgta caacttcaac tacacttacg actacataat gtcttcgtca accagttttg
661 ttgacagttt tgctgataca aaagcgggtc ggtataatcc cagaatggac ccaattatcc
721 cagtggaaaa ttggagaaaa ggctcgcagt gggctgtgtt aacaagaaaa catgctgaag
781 ttgtggttga agatgaagag gttttgccag aattccagaa gcattgcagg agaaggccct
841 taccagagtt ctggcgggac tgggatcgtc ctattcctgc ggaggcatgg aaggcacata
901 actgcatacc agatgagcac tatgttcaaa cattgcttgc acaacatggt cttgaagaag
961 agcttacacg gaggtcagtt acacacagtg cgtgggatct atcatcttct aaagatcgtg
1021 aaaggcgtgg atggcatcct gtaacataca aaatctcaga tgctactcct gcacttgtaa
1081 aatccataaa ggatattgat aatatatatt atgagactga aaatagaaag gagtggtgta
1141 caagtaatgg aaaaccagca ccttgcttcc tttttgcaag gaagtttaca cgagcagctg
1201 gtctgaagct tcttgattta tctttgatag cagcaaatgg cgcatctacc atgtaaagtt
1261 tctccgtcaa aagcagaata ctgccagctt gcacatacgt aaaggaaagt ggtggagggg
1321 acagaagata acagcgaatt ttttttgggc atcttcatta caatttgttg cactctgaaa
1381 agggacatag gtgttctaaa gcaataaagt ttgtttcttt tagcacctag gttagtacat
1441 atgttaaccc actacttagc attataactg taactgtaag caaccacctg cagttggatt
1501 ggcaagaatc acctcagttc ttttcacgac aattcctttt tcaaatttat agagaattgg
1561 catgtcttat acttgcatgc atactgtagt cattccatcg aaggcaatgc gtgatctggt
1621 tacccaaaca ttaatcaagc atgttgaact caggaactgc gtatttcaca tggatttata
1681 ctctcatagc agatctgccg atcaacatgc atgtttggca ttctgttcca tcagaaacat
1741 gggaccctag tgccgtggca atggttatcc cctaccctta ggacctttgg acttttgatg
1801 gcctcaattt aaaactgtgc tggctggaga tgcagcgatg gtgtagccaa ttcaatgatt
1861 ctcatcattg ttgttcctcc aattgatgtg ttacttcttg tactc
//