LOCUS AK100087 2337 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023003B17, full insert
sequence.
ACCESSION AK100087
VERSION AK100087.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2337)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2337
/clone="J023003B17"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2337
/db_xref="Osa1:LOC_Os02g02450"
/note="(Rice Genome Annotation Project) transposon
protein, putative, unclassified, expressed"
/note="mapping to R02-TIGRv4S1-000054F (Chr.2: short
arm=862274, long arm=864879, direction=forward) for TIGR
Pseudomol ver4"
BASE COUNT 485 a 676 c 618 g 558 t
ORIGIN
1 ggctgccagc attttgattc tgtgtgtgtg tcttggttgc aaaaaccaag acatacacac
61 agaatcaaat aataacaaag gtttcctagc ctcaaaggat acatatatat agtttcccta
121 caatacaatg gagcctgtca atgatttcca ggaaggcatt tcaacagagc atgcctttga
181 ggcagagcct gtgccatcat tgtcggaaac aatgacgcca cgatcaatgg tggtgagctt
241 catccttagt gtaactctca gcatcgtcgc catgaaggtc accttgagct ctggcttcat
301 tccgtcgttc agcatcccag ccggcctcct cggtttttgt gtatcccgtg cgtcgatccg
361 cattcttgac tacttcgcag tggcacaact accattcaca cgccaagaga acaccatcat
421 ccagacctgt gtcgtcgcat gcacctcgat cacattcacc ggtggctttg ggacatatat
481 tcttgcaatg ggaaagaaag cagctgtagg ggatgtcaat gcccaaaata acgttgagga
541 gccaagcttt gccaggatga tcaccttcct cttccttatc agctttgctg gcatgttcat
601 catcatgccc ttcaggaagg tcatgatcat taggcaccgg ttgacattcc ccagcggcac
661 agcaacggcg cacctcatca atagcttcca tacacctcaa ggtgtcaagc aagcaaggaa
721 gcaagtgaca ttattgttta aatcgtttgg aggaaccatc gcatggtcgc tcttccagtg
781 gttcttcgcc tctgggccgg gctgtggctt caaattcttc cccacatttg gcctcgaggc
841 atataaacac ggattcttct tcgatttcac catggccaat gtcggcattg gcatgatgtg
901 cccgtacatg atcgtgttct ccgttttcat tggcaccatc atctcgtgcg gtgtaatttg
961 gccgtacatc gagtcaaagg agggcatctg gtacccaagc aaccttgggc ccaacagcct
1021 taacggcatc agaggttaca aggtgttcat cggcttgtcc atgataatgg ctgactgcct
1081 cttcgtcttc ctctgcatca tggtccggac aacatgtgcc atgatcaagc ggcgtcggca
1141 ggcaatgcaa ggtggtggcg gtaatgcgca gccattccag ggtatcgaca tcgccgatca
1201 gccggtgaag agcttcgatg atcgccgcag ggcgcaggtg ttcctccggg acgagatacc
1261 ggactcggtc accattggct gctatgtcct cctgtcgatc atctccatcg ccgccatccc
1321 tcacctctac ccacagatga ggtacagcca tgttgcgctc atctacctcg ccgcgcccgt
1381 cttcgccttc tgcaacgcct acggcttcgg cgtcaccgac atgaacctgg ctagcaccta
1441 ttgcaagatc gccatgttcg cgttcggctc gtgggtcggc atcaagagcg gcggcgtggt
1501 cgccgccctg gtcgccggcg ggatcaccat gtcgatcctg ggcaacgcgg ccgacgtcgc
1561 gcaggacctc aagacgggct acctgacgct gacgtcgccg cgcgccgtgt tcatcagcga
1621 ggcgatcggc acggcgctgg gatgcgtcgt caaccccacc gtgttctggg tgttctacag
1681 ggtgtacaag atgggcagcg gcgacatggg cgacatgccc tacgccaagc tctaccgcgg
1741 cttcgccatg ctcagcgtcg gcgacggcga gcaaggcctg cccaggcaca gcatgctcct
1801 cttcaaggtc ttcttcgtgc tcgccctggc gctcagcgtg ttccgggagg tggcgagccg
1861 gaaggagtgg cgcatccggc gctacatccc gagcaccatc ggcatggcca tcaccttctt
1921 catgccgccg cgcgtgcccg tcggcatgtg catcggcagc ctggtggcgt acctgtggga
1981 gaagatggac gccggccgcg ggcggatgct ctcgccggcg ctggcgtcgg ggctcatctg
2041 cggcgacggc gtcggctcga tcttgctgtc catgctgaca ctcatgggtg ccagggcgcc
2101 catctgcatc aagttcttgt ctcgaggtga caatgtcaag ttggacgcct tcttggcaac
2161 actccatgac atgagatagc tactagctag ctatccatgt agggaaacta gatcattttc
2221 tcaggtgtca aaacttttgt acatatgtat ccacgtcata ggggcttgag ttaggagtcg
2281 tggcaaactg tataatcaag tttcagttca gtctataaac acagtttgat ctcctct
//