LOCUS AK100028 1897 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013147B02, full insert
sequence.
ACCESSION AK100028
VERSION AK100028.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1897)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1897
/clone="J013147B02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 88..1407
/db_xref="Osa1:LOC_Os05g08640"
/db_xref="RAP-DB:Os05g0179300"
/note="(RAP Annotation release2) Transferase family
protein"
/note="(Rice Genome Annotation Project)
10-deacetylbaccatin III 10-O-acetyltransferase, putative,
expressed"
/note="mapping to R05-TIGRv4S1-000229R (Chr.5: short
arm=4713078, long arm=4715065, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG94405.1"
/translation="MAAAAPDKAVERLSQKLVHPSSPTPSAPLRLSWLDRYPTQMALI
ESLHVFKPDPARDAAGQGLAPARAIETALARALVEYYPLAGRLAVSRDSGELQVDCCG
GAGGHGGVWFIEAAVPCRLEDVDYLEYPLAISKDELLPHPRPRPTRDEEDKLILLVQV
TTFACGGFVVGFRFSHAVADGPGAAQFMGAVGELARGGERITVAPSWGRDAVPDPAGA
MVGALPEPAGASRLEYLAIDISADYINHFKSQFAAATGGARCSAFEVLIAKAWQSRTR
AAAFDPSTPINLSFAMNARPLLLPRGGAGFYGNCYYIMRVASTAGRVATASVTDVVRM
IREGKKRLPSEFARWAAGEMAGVDPYQITSDYRTLLVSDWTRLGFAEVDYGWGPPGHV
VPLTNLDYIATCILVKPWAHKPGARLITQCVTPDRVTAFHDAMVDIN"
BASE COUNT 337 a 615 c 537 g 408 t
ORIGIN
1 gattcaattc actcccccct ccagcttctc actccccaca cgcagcttcc agctcatcac
61 cccccacaac cacctcctcc ccctcccatg gcggcggcgg cgccggacaa ggcggtggag
121 cggctgtccc agaagctggt gcacccgtcg tcccccacgc cgtcggcccc gctccgcctc
181 tcctggctcg accgctaccc cacccagatg gcgctcatcg agtcgctcca cgtcttcaag
241 cccgacccgg cgagggacgc cgcggggcag gggctcgccc ccgcgcgcgc catcgagacg
301 gccctcgcga gagccctcgt cgagtactac ccgctcgccg ggaggctcgc cgtctcccgg
361 gactccggcg agctccaggt ggattgctgc ggcggcgccg gcggccatgg cggggtgtgg
421 ttcatcgagg cggctgtccc gtgccggctc gaggacgtgg attacctcga gtaccctctc
481 gccatctcca aggacgagct gctcccccac ccgcgccccc gccccacccg cgacgaggaa
541 gacaagctca tcctgctcgt ccaggtgacg acgttcgcgt gcggcgggtt cgtggtgggg
601 ttcaggttca gccacgcggt ggcggacggc ccgggggcgg cgcagttcat gggcgcggtc
661 ggcgagctcg cccgcggcgg cgagcgcatc acggtggccc cgtcgtgggg gcgcgacgcg
721 gtgcccgacc cggccggcgc catggtcggc gccctcccgg agccggccgg cgcgtcccgc
781 ctcgagtacc tcgccatcga catctccgcc gactacatca accacttcaa gtcccagttc
841 gcggcggcca ccggcggcgc ccgctgctcc gccttcgagg tgctcatcgc caaggcatgg
901 cagagccgca cccgcgccgc cgcgttcgac ccctcgacgc cgatcaacct ctccttcgcc
961 atgaacgccc ggccgctcct cctcccgcgc ggcggcgccg ggttctacgg caactgctac
1021 tacatcatgc gggtggcctc caccgccggg agggtggcga cggcgagcgt caccgacgtg
1081 gtgaggatga tccgggaggg gaagaagcgg ctcccgtcgg agttcgcgcg gtgggccgcc
1141 ggagagatgg ccggagtcga cccgtaccag atcacctccg actaccggac gctgctggtc
1201 tccgactgga cgcggctggg cttcgccgag gtggactacg ggtggggccc accgggccac
1261 gtcgtgccgc tcacgaacct ggactacatc gccacgtgta tcctcgtcaa gccctgggcc
1321 cacaaaccag gggcacggct catcacccag tgcgtcacac ccgaccgcgt caccgccttc
1381 cacgacgcca tggtggacat caactaattt attattataa ttataattat tattattatt
1441 attattccct tttcttttta ttttattttt tttaccacgc cacctttttc actttgtttt
1501 tttaccacta cttccttata attaattaat taattaatta gatattaata atgaagaatt
1561 aagggtaaaa aaaggagagg ataaagaaag gtgaaaagta catattgata ttgagggtac
1621 aggtagatgg tagtagttgt tggcattatt agtgggattg gtattggatt cctttggtgt
1681 tgtttggtca agtgtatact ggagaacagc tactacatgc tgggtattcc ttttattttt
1741 ttttcttttt tttgggatca aaagctggaa ttggtgggaa gccaccaact aaccagtatg
1801 tcccccttga taagtgtacc atatattgta ttcaattttt atcttatttt cagaatggta
1861 tatataagct ggcaaggtgt acagcctctt tagttgc
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