LOCUS AK099721 2451 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013088F16, full insert
sequence.
ACCESSION AK099721
VERSION AK099721.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2451)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2451
/clone="J013088F16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 37..1992
/db_xref="Osa1:LOC_Os03g38990"
/db_xref="RAP-DB:Os03g0586900"
/note="(RAP Annotation release2) Putative DNA helicase
family protein"
/note="(Rice Genome Annotation Project) DNA-binding
protein SMUBP-2, putative, expressed"
/note="mapping to R03-TIGRv4S1-001077F (Chr.3: short
arm=21628348, long arm=21634968, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG94268.1"
/translation="MAGRSGGGGGGSSGKSGTGRMVSLQEFVSSMAPLIDLEKAAEIS
AESATSSKTLERRGCVMANLKCTDAQTGLMGKTLLEFQPNKGDVLPPHKFGTHDVVAL
KPNKADAGSAALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKLANEVTYRRMKDA
LVQLSKGIQTGPSANLIPVLFGENPPMSSKDVAKFSPFNKNLDESQKDAISKALRSRD
VFLLHGPPGTGKTTTIIEIILQEVKRGSKILACAASNIAVDNIVERLSRYRTKLVRLG
HPARLLPQVLDSALDAQVLRADNSSLAGDIRKEMKVLNSKLLKAKDKNTKRDIRKELR
TLAKEERKRQQLAVADVIKNADVVLSTLTGASSKKLDGITFDLVIIDEAAQALEMACW
IALLKGPRCVLAGDHLQLPPTIQSAEAEKKGMGKTLFERLTEAYGDQITSMLTIQYRM
HELIMNWSSKELYNNKIKAHSSVADHMLYDIEEVKRSSSTEPTIILIDTTGCDMEEVK
DEEESTMNEGEAAVSIAHAKLLVESGVRASDIGIITPYAAQVTCLKMMRNKDTKLKDL
EISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDHRRMNVAVTRARRQCCLVCDVETV
SNDKFLKRLVEYFEENGEYLSASEYQS"
BASE COUNT 706 a 476 c 643 g 626 t
ORIGIN
1 gtggtggacg agacgagtga gaggaggaga gcggccatgg cggggcggag tggcggcggc
61 ggcggcggga gctccgggaa gagcgggacg gggaggatgg tgtcgctgca ggagttcgtc
121 tcgtccatgg cgcctctcat agacctggag aaggcggcgg agatatcggc ggagtcggcg
181 acgagctcga agaccctcga gaggaggggt tgcgtcatgg ccaacctcaa gtgcaccgac
241 gcccagacgg ggctgatggg gaagacgctc ctggagttcc aacccaacaa gggcgacgtg
301 cttccacctc acaagtttgg aacacacgat gtggttgctc tgaagccaaa taaggcagat
361 gctggatctg ctgctcttgg gcaaggtgta gtttatcgct tgaaggattc ttccattact
421 gttgcctttg atgacattcc tgaagatgga ttaaatagcc ctctccgcct tgaaaagctt
481 gcaaatgagg tgacataccg caggatgaag gatgcactag ttcaacttag taagggcatt
541 caaacaggcc cttcagcaaa ccttattcct gttttgtttg gagaaaaccc acctatgagt
601 tccaaggatg ttgcgaagtt cagtccattt aacaagaatt tggatgagtc acagaaagat
661 gctatctcga aggccctcag gtcaagggat gttttcttgc ttcatggacc tcctggcact
721 gggaagacaa caactatcat tgagataata ttgcaggagg tgaaacgtgg atcaaagatt
781 cttgcttgtg ctgcttctaa catcgccgtg gataacattg ttgagcgact ctcccgatat
841 agaaccaaat tggtgaggtt aggccatcct gctcgattac taccccaagt gttggacagt
901 gctcttgacg cacaggtatt gcgagcagat aacagcagct tagcaggaga tattcgcaaa
961 gaaatgaagg tgcttaatag caaattgctg aaagctaagg ataagaatac aaaaagggac
1021 atcaggaaag agctcagaac ccttgccaaa gaagagagaa aacgacaaca gcttgctgtt
1081 gctgatgtga taaaaaatgc agatgttgta ctgtcgactt tgactggtgc atcttccaaa
1141 aagctagatg gtattacatt tgatttggtc attattgatg aagctgctca ggcacttgag
1201 atggcatgtt ggatagcctt attgaagggt ccaagatgtg tgcttgctgg agaccatctt
1261 caacttcctc cgactatcca aagtgctgag gctgagaaga aggggatggg aaagacactc
1321 tttgaacgcc ttactgaagc ttatggagat caaattacat ccatgctcac tatccagtac
1381 agaatgcatg agctcataat gaattggtca tctaaagaac tttataataa caagatcaaa
1441 gctcattcta gtgttgctga tcatatgctc tatgacattg aagaagtgaa aagatcttct
1501 tccacagagc cgactatcat actaattgac actactgggt gtgacatgga agaagtaaaa
1561 gatgaggagg agagcactat gaatgagggt gaggctgcag tatccattgc tcatgccaag
1621 ctgcttgttg agagtggtgt ccgtgcatct gatattggaa taattacacc ttatgctgca
1681 caggtaacct gtctgaagat gatgagaaac aaagatacta aactgaagga cttggagata
1741 tcgacagttg atgggttcca gggtagggag aaagaagcca tcatcatttc aatggtcaga
1801 tccaactcaa agaaagaggt cggattctta agtgatcata gacgaatgaa tgttgctgta
1861 acacgagcca gaaggcagtg ctgcctagtg tgcgatgtag agaccgtaag caacgacaaa
1921 ttcttgaaac gcttggttga gtactttgag gagaacgggg agtacttgag tgcatcagaa
1981 taccagagct gatgacttgg ggtgttaacc cttaaccgtg atagcccgtg cttatcgcaa
2041 agatagtgaa gagatatatc caaacgatgc ttgtgatagg aacatcgtgc acttcaaact
2101 ggtgcaatat ggccaatgga gatactgtca ttcgactttt atagattgga aacagatcgc
2161 tgtgagactg aacagataat tagctcagga gtggatcaat ttcgtcttga ctggccctgt
2221 tctggtctct tcttctgtgg cttatggaaa tgaaacctca gttatgtgtt tttatatgtc
2281 cgttctttca actgatgtac aatgatagaa gactaatttt attcatccat gtgcaaatct
2341 accatagttt tttgcatgga gttttgaaac ttgggtccac aaaaatagta ataataggat
2401 aggaggttga ctgtactgaa cttcgcatga taattaatct gtatctcatc c
//