LOCUS AK099369 2630 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033048C09, full insert
sequence.
ACCESSION AK099369
VERSION AK099369.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2630)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2630
/clone="J033048C09"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 66..2378
/db_xref="Osa1:LOC_Os05g39850"
/note="(Rice Genome Annotation Project) DNA replication
licensing factor MCM3, putative, expressed"
/note="mapping to R05-TIGRv4S1-000810F (Chr.5: short
arm=23336456, long arm=23341388, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG94091.1"
/translation="MDVNEEAMAAHKRAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLI
IGMDDLRNHSLDLARRVIRSPAEYMQPASDAVTEVARNLDPKFLKEGQRVLVGFSGPF
GFHRVTPRDLMSSFIGTMVCVEGIVTKCSLVRPKVVKSVHYCPATGGTLSREYRDITS
FVGLPTGSVYPTRDENGNLLVTEYGMCEYKDHQTLSMQEVPENSAPGQLPRTVDIIVE
DDLVDSCKPGDRVSIVGVYKALPGKSKGSVSGVFRTVLIANNVSLMNKEANAPVYTRE
DLKRMKEISRRNDTFDLLGNSLAPSIYGHLWIKKAVVLLMLGGVEKNLKNGTHLRGDI
NMMMVGDPSVAKSQLLRAVMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGA
MVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVIAAANPI
YGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPEIDRQISEHVARMHRYCTDDGG
ARSLDKTGYAEEDDGDVNAAIFVKYDRMLHGQDRRRGKKSKQDRLTVKFLKKYIHYAK
NLIQPRLTDEASDHIATSYAELRDGGANAKSGGGTLPITARTLETIIRLSTAHAKMKL
RHEVLKTDVEAALQVLNFAIYHKELTEMEEREQREMEMKQQADHDAGASGGNADEHRS
SGNDPMDVDVGNASNDQDVPAERIEAFEAILGQHVLANHLDQISIDEIEQTVNREAAA
PYNRRQVEFILERMQDANRIMIRDGIVRII"
BASE COUNT 736 a 533 c 677 g 684 t
ORIGIN
1 gggcttcccg ctcctctctc tctccctccc ctccggtcgc gcgtcccgtc tccggagcag
61 cagccatgga cgtcaacgag gaggcaatgg cggcgcacaa gcgcgcgttc ctcgacttcc
121 tcgaccagga tgtcgggaag ggggtgtaca tgcaggccgt gcgcgacatg gtgcagaaca
181 agcgccaccg gctcatcatc ggcatggacg acctccggaa ccacagcctc gatctcgccc
241 gcagggtgat acggagcccc gcggagtaca tgcagccggc gtcggacgcg gtgacggagg
301 tggcgaggaa cctggacccc aagttcttga aggaagggca gcgcgtgctg gtgggattct
361 cggggccctt cggcttccac agggtcacgc ccagggacct catgtcgtcc ttcatcggga
421 ctatggtctg cgtcgagggc atcgtcacga aatgttcact agtaaggccg aaagttgtta
481 agagtgttca ctattgccct gctactggag gtactctctc acgtgaatac agggacatca
541 catctttcgt aggcctacct actggttcgg tttatccaac aagggatgaa aatggtaact
601 tgttggtcac tgagtacggg atgtgtgaat acaaggatca ccaaacactc tccatgcaag
661 aagtgcctga aaattctgcc cctggacagc tcccaagaac agtggacatt attgtagaag
721 atgacctagt agattcttgc aagccaggtg accgagtatc aattgttggt gtttacaagg
781 ctcttccagg gaaaagcaag ggcagtgtta gtggtgtgtt caggactgtc cttattgcaa
841 acaatgtttc acttatgaac aaagaagcaa atgcacctgt ctatactcgg gaggatttga
901 agaggatgaa agaaatatca aggagaaatg acacatttga cttactagga aattcacttg
961 ctccatctat atatggccat ctgtggataa agaaagcagt agttctatta atgcttggtg
1021 gtgtagagaa gaatctgaag aatggaactc acttgagagg agatataaac atgatgatgg
1081 taggagatcc ttcagttgcc aagtcccagc tcctaagagc ggttatgaac attgcccctt
1141 tggctatttc aactactgga aggggttcat ctggtgttgg tttgaccgct gctgtcactt
1201 ctgatcaaga gactggtgag agaaggctgg aggctggtgc catggttctt gctgatcgtg
1261 gtgttgtctg cattgatgag tttgataaga tgaatgatca ggaccgagtg gctattcatg
1321 aagttatgga acagcaaact gtgacgattg caaaggcagg aattcatgcg tcactaaatg
1381 cgagatgtag tgtgattgct gcagcaaatc caatatatgg aacttatgac cgttcattga
1441 caccaaccaa gaacattggg cttccagatt cattactctc acgttttgat ttgcttttta
1501 ttgttcttga tcaaatggat cctgagattg atcgtcaaat ttctgaacat gttgcacgga
1561 tgcatagata ttgcactgat gatggaggag caagatctct tgataaaaca ggatatgctg
1621 aagaagatga tggtgatgtt aatgcagcca tatttgttaa atatgataga atgctccatg
1681 ggcaggacag aaggagaggc aagaaatcca aacaggacag actgactgtc aaattcctga
1741 agaaatatat tcattatgca aagaacctta ttcagccaag actaactgat gaggcatctg
1801 atcatattgc aacttcatat gctgagctca gggatggtgg tgcaaatgca aagtctggtg
1861 gaggtacact tccgatcaca gcgaggacac tggaaaccat aattcgtcta tctactgctc
1921 atgccaagat gaaattgaga catgaggttc taaaaactga cgttgaagct gcactgcaag
1981 ttctgaattt tgcaatatac cacaaagagt taactgagat ggaagagcgt gaacagagag
2041 agatggaaat gaaacaacaa gctgatcatg atgcaggtgc aagtggtggt aatgcagatg
2101 agcatagaag ttctggaaac gacccaatgg atgtggatgt aggaaatgca tcgaatgatc
2161 aggatgttcc tgcggagaga attgaagcat ttgaggcgat tcttggtcag catgtgttgg
2221 caaatcatct cgatcaaata tcaattgacg aaattgagca aactgttaat agagaggcag
2281 ctgcacctta caatagacgt caagtagaat tcattttgga gaggatgcaa gatgcaaaca
2341 ggataatgat acgagatggc atcgttcgga taatctaact tcaaaaatca tgtcttgcat
2401 tgtggacaag ctgattactg tgcatcatcc ttgtcttttt catctgatac ttagccagtt
2461 tggcattgca gaatgtctgc atctgcaccg gaggttgatg tacccgtgta tcttaatttt
2521 taacagcgag atttatgatg atcatctgtg tctttgtact ttaaattcat gtaccgtaac
2581 gtaacaattc tcctgatcta gtgatatgta gtccctgatt ttatatggtc
//