LOCUS AK099323 2141 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033008G16, full insert
sequence.
ACCESSION AK099323
VERSION AK099323.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2141)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2141
/clone="J033008G16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 247..1941
/db_xref="Osa1:LOC_Os06g45910"
/note="(Rice Genome Annotation Project) peptidyl-prolyl
cis-trans isomerase-like 4, putative, expressed"
/note="mapping to R06-TIGRv4S1-000941F (Chr.6: short
arm=27791516, long arm=27797500, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG94066.1"
/translation="MSVLIVTSVGDIEVDLHTDMCPLTTKNFLKLCKMKYYNGCLFHK
VEKDFLAQTGDPTGTGAGGDSVYKFLYGDQARFFDDEIRPDLRHSKKGTIAMASAGEN
CNASQFYITLRDDVDYLDDKHTVFGMVAEGFDTLTKISETYVDDKGRPFKDIRIKHTY
VLDDPFDDPPQLSELIPENSPVGKPQDEIAEERLEDSWVPMDEMVAPEELEEMIRSKE
AHTNAVILESVGDIPDAEIKPPDNVLFVCKLNPVTQDEDLYTIFSRFGTVTSAEIIRD
YKTGDSLCYAFIEFETKEACERAFFKMDNCLIDDRRIHVDFSQSVSKLWGQFRQSKRN
ANKDGCFKCGAPDHIAKDCDQGTEQKNKGPSYVLKDENTQRGGNNRRSYDLVFDEDGE
NYTDQQDPGSTGRRKIQRTDDRKSGLPPRGDHDRISRERTHSDENGREGGKEGDRDRG
IRKHEDYHRYNKSGERSSSRYDDRGYSKHESRGKYRDGNDDYRRQPGGGSRYGRDKYE
GERRYREDDGHGRSDRHKRDESDNRKRSPDTGKHRREDGGHRETSKHRERRQRDDR"
BASE COUNT 643 a 426 c 574 g 498 t
ORIGIN
1 gataaaaaac aaaaaagaaa aaaaatagaa acacctcgtc ggcgtttaga aaggcggttg
61 gggttcggcg gcggcggcgg aggccggtga gtatccgcgg ccgcgcgaac cagtcgcctg
121 agctcccaga agcatccggc gctgcggctc ctccgtgatt tgtgtatttt tccccttgaa
181 tcccgcgccg tcgcggccgc cgtgtgctct tgccgccggc gagaaggggg gaaaacgccc
241 gcggagatgt cggtcctcat cgtgaccagc gtgggggaca tcgaggtgga cctccacacc
301 gacatgtgcc ccctcaccac caagaacttc ctcaagctct gcaagatgaa gtattacaat
361 gggtgcctgt tccacaaggt ggagaaggat ttcttggcac aaactgggga cccaactgga
421 acaggagctg gaggcgattc tgtatacaag ttcctttatg gtgatcaagc tcgatttttt
481 gatgatgaga tccgaccaga ccttaggcat tcaaaaaagg gaactattgc tatggcgagt
541 gctggtgaaa attgcaatgc ctcgcagttc tatatcacct tgcgggatga cgtagactac
601 cttgatgata aacacacagt gttcggcatg gttgctgaag gctttgacac gctgacaaag
661 attagtgaaa catatgttga tgataaaggg agaccattta aggacatcag gattaaacat
721 acgtatgtct tggatgatcc ttttgacgat cctcctcagc tcagtgaact tattcctgag
781 aattctcctg tagggaaacc acaggatgag attgcagaag agcgcttaga ggatagctgg
841 gtccctatgg atgaaatggt ggctcctgaa gaacttgagg agatgatccg ctccaaagaa
901 gcacatacaa atgctgtgat tcttgagagc gtgggagata ttccagatgc tgagatcaaa
961 ccaccagaca acgttttatt tgtttgtaaa ctcaacccag taacacaaga tgaagattta
1021 tatacaattt tttctcgttt tggaactgtg acatcagctg aaataatccg tgattacaag
1081 actggtgata gcttatgcta tgcttttatt gaatttgaga caaaggaggc ttgtgagcgg
1141 gcattcttca agatggacaa ttgtttgatt gatgatcgaa gaatacatgt tgactttagt
1201 caaagtgttt caaaactgtg gggtcagttc agacaaagca aaagaaatgc aaataaagat
1261 ggatgcttca agtgtggcgc ccctgatcac atagccaaag actgtgacca gggcactgag
1321 cagaaaaaca aaggcccaag ttatgtcctg aaagatgaaa acactcagcg tggtggaaat
1381 aaccgtcgaa gctatgatct tgtctttgat gaagatggtg aaaattatac tgatcagcaa
1441 gatcctggaa gtactggccg aagaaagatt caaagaacag atgatcgcaa atcagggctg
1501 ccacctcggg gtgaccatga caggattagc cgggagagaa ctcacagtga tgagaatggt
1561 agagaaggtg gtaaagaagg tgatagggac cgagggattc gtaagcacga ggactaccac
1621 cgttacaata aatctggtga acggagctct agtagatacg atgatcgtgg ctacagcaag
1681 cacgagagca ggggcaaata tagggatggc aatgatgatt acagacgaca accgggaggt
1741 ggcagtcgat atggcaggga taagtatgaa ggtgaacggc gctacagaga agatgatggc
1801 catggaagga gtgaccgtca caagagagat gaaagtgata acaggaaaag aagcccagat
1861 actggtaagc atagaagaga agacggtggt caccgtgaga caagcaagca cagggaaagg
1921 aggcagagag atgatagata ggtcactgca tcaccgtcag ttttgtcttg cctgtttctc
1981 atcatacatt gaattttgtc attcttaatc caaagatagc accagaacac taaacatgta
2041 gcttagaatc tgcgtgtaga cattatgaga gctccactgg ctacagattg ttgtaacttg
2101 tagacctttt cttttctata catgctcatg gacgttgttc t
//