LOCUS AK098983 2385 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013091M04, full insert
sequence.
ACCESSION AK098983
VERSION AK098983.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2385)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2385
/clone="J013091M04"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 108..2117
/db_xref="Osa1:LOC_Os06g01390"
/note="(Rice Genome Annotation Project) acyl-coenzyme A
oxidase 1.2, peroxisomal, putative, expressed"
/note="mapping to R06-TIGRv4S1-000012F (Chr.6: short
arm=226907, long arm=231614, direction=forward) for TIGR
Pseudomol ver4"
/protein_id="BAG93846.1"
/translation="MEGGVGGEVDHLAGERATAQFDVEHMKVAWAGSRHAVDVADRMA
RLVASDPVFRKDNRTMLPRKELFKDTLRKAAHAWKRIVELRLTEEEANLLRLYVDQPG
YVDLHWGMFVPAIKGQGTEEQQKKWLPLAYRFQIIGCYAQTELGHGSNVQGLETTATF
DPKTDEFVIHSPTLTSSKWWPGGLGKASTHAVVYARLITEGKDYGIHGFIVQLRSLED
HSPLPGVTLGDIGGKFGSGAYNSMDNGVLRFDHVRIPRDQMLMRLSQVTKEGKYVHSD
VPKQLLYGTMVFVRQTIVADASKALSRATCIAVRYSAIRKQFGPQTGGPETQVLNYKT
QQSRLFPLLASAYAFRFVGEWLKWLYTDVTHKLEAKDFSTLQEAHACTAGLKAVTTSA
TADGIEECRKLCGGHGYLNSSGLPELFAIYVPACTYEGDNVVLLLQVARFLMKTVSQL
ASGKQPVGTTAYMGNIQYLMQCKCGVNTAEDWLNPAAIREVFEARALRMAVNCAQNIN
KAPSQEEGFYELSPDLLEVAVAHIQLIIVTKFIEKLEQDIPGEGVKEQLCILCNVYAL
YLVHKHLGDFLSTGSITARQGALANEQLGKLYAQVRPNAVALVDAFNYTDHYLGSVLG
RYDGNVYPALYEEAWKDPLNDTDVPDGYQEHLRPLLKQQLKLSRL"
BASE COUNT 573 a 552 c 643 g 617 t
ORIGIN
1 gcttcttcct ccctgttccc ttttcgattc gattggattg gattgttttg ctggctcgct
61 ctctctctct ctctcgtggt gtggtgtgga caagaaagga aggaaagatg gagggcggcg
121 taggggggga ggtggaccac ctcgccggcg agagggccac cgcgcagttc gacgttgaac
181 acatgaaggt tgcctgggct ggctcccgcc acgccgtcga tgtcgccgac cgcatggcgc
241 gcctcgtcgc ttccgacccc gtgttccgca aggataacag gactatgctc cccaggaagg
301 agctgttcaa ggacacactc agaaaggcag cccatgcgtg gaagcgtatc gtcgagctcc
361 gtcttacaga agaggaggca aatttgctaa ggctatacgt ggaccagcct ggttatgttg
421 atctgcactg gggcatgttt gttcctgcta taaaaggcca agggactgaa gagcagcaga
481 agaagtggct acctctggcc tacaggttcc aaataattgg atgctatgct cagactgaac
541 ttggtcatgg ttccaatgtt cagggccttg aaacaaccgc cacatttgac ccaaagactg
601 atgagtttgt tatacacagc ccgacactga cctctagcaa gtggtggcct ggtggcttgg
661 gaaaagcttc cactcatgca gttgtgtatg ctcgtctgat aactgaagga aaggactacg
721 gcatacatgg tttcattgtg caactacgaa gcctagagga ccactctccc cttcccggtg
781 ttactcttgg tgatatcggc ggaaaatttg gtagtggtgc atacaacagt atggataatg
841 gagttctgcg atttgaccat gtgcgcatcc caagggatca aatgttgatg aggctttcac
901 aagttacgaa agagggaaaa tatgtgcact cagatgtccc aaaacagctg ctttatggga
961 caatggtttt tgttcgtcaa acaattgttg cagatgcttc taaggcttta tcacgtgcta
1021 cttgcattgc tgtaagatac agcgctattc gaaagcagtt tggccctcaa actggtggcc
1081 ctgagactca ggtcctcaat tacaagactc agcaaagcag actctttcct ttgctggctt
1141 cagcttatgc atttaggttt gtgggtgagt ggctgaagtg gctgtacacg gatgtcacac
1201 ataaactgga agccaaggat ttctcaacac ttcaagaggc ccatgcctgt actgctgggt
1261 tgaaggctgt gacaacatct gcgacagctg atggaattga agaatgccga aaactctgtg
1321 gtggacatgg ttacctgaac agcagcgggc ttcctgaatt gtttgctatc tatgttcctg
1381 cttgcactta tgaaggagac aatgttgttt tgctattgca ggttgcaagg tttctaatga
1441 agactgtatc ccagttagct tctggaaaac agcctgttgg tacaacggct tacatgggca
1501 acatacagta cttgatgcaa tgcaaatgtg gtgtaaatac agctgaagat tggctaaatc
1561 ctgctgccat acgagaggta tttgaagctc gggctctcag gatggcggtg aattgtgccc
1621 agaacataaa caaggcgcca agccaagaag aagggtttta tgagctatcc cctgatctgc
1681 ttgaggtggc ggtggcccat atccagttga taattgtaac caagttcata gagaaattag
1741 agcaggacat ccctggtgag ggagtgaagg agcaactgtg catcctttgc aatgtgtacg
1801 cgctgtatct tgttcacaag catctgggtg acttcctgtc gacggggagc atcacagcaa
1861 ggcagggagc gctggcaaac gagcagctgg gaaagctgta tgcgcaggtg cggccgaacg
1921 cggtggcgct ggtggacgcg ttcaactaca ccgaccacta cctggggtcg gtgctggggc
1981 gctacgacgg caatgtttac ccggcgctgt acgaggaggc gtggaaggac cccctcaacg
2041 acacggatgt gccggacggt taccaggagc acctccgccc tctgctcaag cagcagctca
2101 agctctccag gctatgatca tccatccatc atcctccctt tcttgctcta tcaatcatat
2161 catactgcat acgatttgag tagtagtaaa ataacaccag catatgcaag gtgctggctg
2221 gctgctagta ttttcttttt ctttataatt tatttatttg gggagagctg gtattgtctt
2281 atttatttgg gaagagctgg tattgtatgt ctggtgattt ggtatagctg taactgtgaa
2341 cttcaccaca tctccccctt ctcaagggca tatgcattct actcc
//