LOCUS AK098923 2702 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013002P14, full insert
sequence.
ACCESSION AK098923
VERSION AK098923.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2702)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2702
/clone="J013002P14"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2702
/db_xref="Osa1:LOC_Os06g09450"
/note="(Rice Genome Annotation Project) sucrose synthase
1, putative, expressed"
/note="mapping to R06-TIGRv4S1-000265R (Chr.6: short
arm=4795670, long arm=4801473, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 658 a 642 c 674 g 728 t
ORIGIN
1 gtccattcgt ttgctcgtct ctgaccacca ttggttcctg aaattgagtc atggctgcca
61 agctagctcg cctccacagt ctccgcgaac gcctcggtgc caccttctcg tctcatccca
121 atgagttgat tgcactcttc tctaggtatg ttaaccaggg aaagggaatg ctccagcgtc
181 accagctgct tgcggagttc gatgccttga tcgaagctga caaagagaaa tatgctccct
241 ttgaagacat tctccgggct gctcaggaag ccattgtgct gccgccctgg gttgcactgg
301 ccatcaggcc aaggcctggt gtctgggact acattcgggt gaatgtaagt gagttggcag
361 tggaagagct gagtgtttct gagtacttgg cattcaagga acagcttgtt gatggacaca
421 ccaacagcaa ctttgttctt gagcttgatt ttgagccctt caatgcctcc ttcccgcgcc
481 cgtccatgtc caagtccatc ggaaatgggg tgcagttcct taaccgtcac ctgtcgtcca
541 agttgttcca ggacaaggag agcctctacc ccttgctgaa cttcctgaaa gcccataacc
601 acaagggcac gacaatgatg ctgaatgaca gaattcagag ccttcgtggg ctccaatcat
661 cccttagaaa ggcagaagaa tatctgatgg gcattcctca agacacgccc tactcggagt
721 tcaaccacag gttccaagag ctcggtttgg agaagggttg gggtgactgt gcaaagcgtg
781 tgcttgacac catccacttg cttcttgacc ttcttgaggc ccctgatccg gccaacttgg
841 agaagttcct tggaactatt ccaatgatgt tcaatgttgt tatcctgtct ccgcatggat
901 actttgccca atccaatgtg ttgggatacc ctgatactgg tggtcaggtt gtgtacattt
961 tggaccaagt ccgcgctttg gagaatgaga tgcttttgag gatcaagcag caaggccttg
1021 atatcacacc taagatcctc attgtaacca ggctgttgcc tgatgctgtt ggtactacat
1081 gcggccagcg tgtggagaag gttattggaa ctgagcacac tgacattctt cgtgttccat
1141 tcaggagtga gaatggtatc ctccgcaagt ggatctcccg ttttgatgtc tggccattcc
1201 tggaaacata cactgaggat gttgcaaacg aaattatgag ggaaatgcaa gccaaacctg
1261 atctcatcat tggcaattac agtgatggaa accttgttgc cactctgctg gctcacaaat
1321 taggagttac ccagtgtacc attgctcatg ccttggagaa aaccaaatac cccaactcag
1381 acatatactt ggacaagttt gacagccagt accacttctc atgccaattc actgctgatc
1441 ttatcgccat gaatcacact gatttcatca tcaccagtac attccaagaa attgctggaa
1501 gcaaggacac tgtggggcag tatgaatcac acattgcatt cacccttcct gggctttacc
1561 gagttgtgca tggcatagat gtttttgatc ccaagttcaa cattgtctct cctggagctg
1621 acatgagtgt ctacttcccg tacaccgagg ctgacaagag gctcactgct ttccaccctg
1681 aaattgagga gcttctctac agtgaagtcg agaacgatga acacaagttt gtattgaagg
1741 acaagaacaa gccaatcatc ttctccatgg ctcgtcttga ccgagtgaag aacatgacag
1801 gtctggttga ggtgtatggt aagaatgcac atctcaggga tttggcaaac cttgtgattg
1861 tttgtggtga ccacggcaat cagtccaagg acagggagga gcaggctgag ttcaagaaga
1921 tgtacggtct cattgaccag tacaagttga aggggcatat ccgctggatc tcagctcaga
1981 tgaaccgtgt tcgtaacggg gagttgtacc gatacatttg tgacaccaag ggagtctttg
2041 tccagcctgc attctatgaa gcgtttggtc tgactgtcat cgaagccatg acatgtggtt
2101 tgccaacaat cgcaacatgc catggtggcc ctgctgagat tattgttgat ggggtgtctg
2161 gtctgcacat tgatccttac cacagtgaca aggctgctga tatcttggtc aacttctttg
2221 agaagtgcaa gcagggttca acctactggg acaatatttc acagggaggt ctgcagagga
2281 tttacgagaa gtacacctgg aagctgtact ctgagaggct gatgaccttg actggtgtat
2341 acggattctg gaagtacgta agcaaccttg agaggcgcga gactcgccgt tacattgaga
2401 tgttctatgc tctgaaatac cgcagcctgg ccagcgccgt cccattggct gtcgatggag
2461 agagcacatc caagtaatgg aggggaaaat atgcatcttc agcaggagaa gccgtcagct
2521 gcattcgaat ttgataattt tctgtagttg tcatttggca tccatgtttg ccatggatgt
2581 gtactatgtc taaggtttca gtacttttgc gagattttgg gcagtgcttg cctcaaataa
2641 acgccggttc ctggtgttta tcgttcagaa ttcaatgcaa tgttttattg ccgcgcttcc
2701 tc
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