LOCUS AK073980 2597 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033076G02, full insert
sequence.
ACCESSION AK073980
VERSION AK073980.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2597)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2597
/clone="J033076G02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 96..2285
/db_xref="Osa1:LOC_Os02g55410"
/db_xref="RAP-DB:Os02g0797400"
/note="(RAP Annotation release2) MCM family protein"
/note="(Rice Genome Annotation Project) DNA replication
licensing factor MCM5, putative, expressed"
/note="mapping to R02-TIGRv4S1-001525R (Chr.2: short
arm=33930360, long arm=33934636, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG93743.1"
/translation="MSGWDEGAVFYSDQAQFPRGGPGGDPSADLTRHSALRKFKEFLR
GFTGPTGDFPYRESLVHNRDHVTVAIEDLDAFDAELSDKIRKSPADYLPLFETAASEV
LASLRSKVAGETGEMEEPATGDVQIFLSSKENCLSMRSIGADYMSKLVKIAGITIAAS
RVKAKATHVTLLCKNCRSVKTVPCRPGLGGAIVPRSCDHVPQPGEEPCPLDPWIAVPD
KSKYVDLQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTVIGIYSVYQAS
ANQKGAVGVKQPYIRVVGLEQSRDANSNGPSNFTLDEEMEFKEFAQRPDAYVKICSMI
GPSIYGHSDVKKAIACLLFGGSKKRLPDGVRLRGDIHVLLLGDPSTAKSQFLKFVEKT
APIAVYTSGKGSSAAGLTASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDR
VAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPIAGRYDDLKTAQDNIDLQTTILS
RFDLIFIVKDVRMYDQDKRIASHIIKVHASGAAASSKNTDASEGENWLKRYIEYCRVT
CKPRLSEKAAEMLQNKYVEIRQKMRQQAHETGRAAAIPITVRQLEAIIRLSESLAKMR
LTSVATPEHVEEAFRLFNVSTVDAARSGINEHLNLSPDIANEIKQAEAQIKRRMGIGS
HISERRLIDELNRMGMNESIVRRALLIMHQRDEVEYKRERHVIVRKA"
BASE COUNT 688 a 623 c 675 g 611 t
ORIGIN
1 ggtcttcccc cctttccccg ccgcccgcgc acccacgcgt ctctctccct ctctctccgc
61 cgccgccgcc gccgcagcca gccagccatc cagccatgtc gggttgggac gagggcgccg
121 tcttctacag cgaccaggcg cagttcccgc gcggcggccc cggcggcgac ccctccgccg
181 acctcacccg ccactccgcc ctccgcaagt tcaaggagtt cctccgcggc ttcaccggcc
241 caaccggcga cttcccctac cgcgagagcc tggtgcacaa ccgcgaccat gtcaccgtcg
301 ccatcgagga cctcgacgcc ttcgacgccg agctgtccga caagatccgg aagtctcccg
361 ctgattacct accgctgttt gagacggctg cgtccgaggt cctcgcgagc cttcggtcca
421 aggtcgctgg agagaccggc gagatggagg agcccgccac cggcgacgtg cagatcttct
481 tgtcctcaaa ggagaactgc ctgtccatga ggtctattgg ggcggattac atgtccaagc
541 tggtgaagat tgccgggatc acaatcgccg cgtcgagggt gaaagctaag gccactcatg
601 tcacgctgct ctgcaagaac tgcagaagtg tgaaaacggt gccgtgtagg cctggccttg
661 gtggggctat tgtcccacga tcgtgcgacc atgttcctca gcctggagaa gagccttgcc
721 ccttggaccc ctggattgca gttccagata agagcaagta tgtggatctc cagaccctca
781 aattgcagga aaatcctgag gatgttccaa ctggtgagct cccgaggaat atgctgctgt
841 ccgtagacag gcatcttgtt cagaccattg ttcctggaac tagattaact gtaattggta
901 tctacagtgt ctaccaagca tctgcaaacc aaaagggtgc tgttggagtc aaacagcctt
961 acattagagt tgtggggttg gagcagtccc gagatgccaa ctcgaatggt ccctcaaatt
1021 ttacacttga tgaggaaatg gaattcaaag aatttgcaca gaggccagat gcatatgtca
1081 agatttgctc aatgattggc ccttcaattt atggccattc tgatgtcaag aaagctattg
1141 catgcttgct gtttggtggc tcaaagaaga ggctaccgga tggtgtccgt ttgagagggg
1201 acattcatgt cttgctgctg ggtgatccat caacagcaaa atcacagttc ctcaagtttg
1261 tggagaagac agcgccgatt gctgtctata catctgggaa aggttcatca gcagctggtc
1321 tcacagcgtc agtaattcgg gacggtagct ctcgagagtt ttatttggaa ggaggggcca
1381 tggttttggc tgatggtgga gttgtttgta ttgatgagtt tgacaaaatg aggcctgagg
1441 accgagttgc aattcacgaa gcaatggaac agcagaccat ctcgattgcc aaagctggca
1501 ttacaacagt actcaattca aggacctcgg tactagcagc tgccaatcca attgcagggc
1561 gctacgatga tcttaagact gcacaagata acattgatct gcagacaacc atcctttcta
1621 gatttgatct aatctttatt gttaaagatg tcagaatgta tgatcaagac aagcgaattg
1681 caagccacat cattaaggtg catgccagtg gtgctgctgc ttcatccaag aatacagatg
1741 ctagtgaagg agagaattgg ctaaaaaggt acattgagta ttgccgtgtt acttgtaaac
1801 cacgactctc agaaaaggca gcagagatgc ttcagaacaa atatgtggag attagacaga
1861 aaatgagaca acaagctcat gaaacaggga gggctgcagc tatacccatc actgtgcggc
1921 agcttgaagc cattatacgt ttgagtgaat ctcttgcaaa gatgagattg acaagtgtgg
1981 ctacaccaga gcatgttgaa gaggcattta ggctgttcaa tgtctccact gttgatgccg
2041 caagatctgg aatcaatgag catttgaacc tatcaccaga tattgcaaat gagatcaagc
2101 aagctgaggc acaaataaag agaaggatgg gaattggaag ccacatatcc gagcgacgcc
2161 tgatcgatga actaaatagg atggggatga atgaatccat tgtgcgaaga gcccttctga
2221 tcatgcacca aagggatgaa gtggagtaca agagagagcg ccatgtcatt gtccggaagg
2281 cttgaggtga actgtggagt atttataaat cgaggacaac ttctattcag actgtataag
2341 gctatgagtt cactgaaact gtaatctctg ggagaagaca aggacatgtt tgagtttcgg
2401 ttgatcactg acatgaccat tgtaatctgc aagagtagaa gaaatgcact ccgtccttga
2461 tgaaactgta gttaaactac agtattaaag atgtaactgt agtgaaacca tgtaaccagg
2521 gttctgaaat ggctaatgta ttaaactaca gtattaattc atggatataa atggctaata
2581 ttctgcagtg cccagac
//